Cañada Javier E, Delgado Elena, Gil Horacio, Sánchez Mónica, Benito Sonia, García-Bodas Elena, Gómez-González Carmen, Canut-Blasco Andrés, Portu-Zapirain Joseba, Sáez de Adana Ester, De la Peña Mireia, Ibarra Sofía, Cilla Gustavo, Iribarren José Antonio, Martínez-Sapiña Ana, Thomson Michael M
HIV Biology and Variability Unit, Centro Nacional de Microbiología, Instituto de Salud Carlos III, Majadahonda, 28220 Madrid, Spain.
Department of Microbiology, Hospital Universitario Araba, 01009 Vitoria-Gasteiz, Spain.
Viruses. 2021 Jan 12;13(1):93. doi: 10.3390/v13010093.
The extraordinary genetic variability of human immunodeficiency virus type 1 (HIV-1) group M has led to the identification of 10 subtypes, 102 circulating recombinant forms (CRFs) and numerous unique recombinant forms. Among CRFs, 11 derived from subtypes B and C have been identified in China, Brazil, and Italy. Here we identify a new HIV-1 CRF_BC in Northern Spain. Originally, a phylogenetic cluster of 15 viruses of subtype C in protease-reverse transcriptase was identified in an HIV-1 molecular surveillance study in Spain, most of them from individuals from the Basque Country and heterosexually transmitted. Analyses of near full-length genome sequences from six viruses from three cities revealed that they were BC recombinant with coincident mosaic structures different from known CRFs. This allowed the definition of a new HIV-1 CRF designated CRF108_BC, whose genome is predominantly of subtype C, with four short subtype B fragments. Phylogenetic analyses with database sequences supported a Brazilian ancestry of the parental subtype C strain. Coalescent Bayesian analyses estimated the most recent common ancestor of CRF108_BC in the city of Vitoria, Basque Country, around 2000. CRF108_BC is the first CRF_BC identified in Spain and the second in Europe, after CRF60_BC, both phylogenetically related to Brazilian subtype C strains.
1型人类免疫缺陷病毒(HIV-1)M组具有非凡的基因变异性,已鉴定出10个亚型、102种循环重组型(CRF)和众多独特重组型。在CRF中,已在中国、巴西和意大利鉴定出11种源自B和C亚型的重组型。在此,我们在西班牙北部鉴定出一种新的HIV-1 CRF_BC。最初,在西班牙的一项HIV-1分子监测研究中,在蛋白酶-逆转录酶区域鉴定出一个由15种C亚型病毒组成的系统发育簇,其中大多数来自巴斯克地区的个体,且通过异性传播。对来自三个城市的六种病毒的近全长基因组序列分析表明,它们是BC重组型,具有与已知CRF不同的一致镶嵌结构。这使得能够定义一种新的HIV-1 CRF,命名为CRF108_BC,其基因组主要为C亚型,带有四个短的B亚型片段。与数据库序列的系统发育分析支持亲本C亚型毒株源自巴西。贝叶斯合并分析估计,CRF108_BC的最近共同祖先于2000年左右出现在巴斯克地区的维多利亚市。CRF108_BC是在西班牙鉴定出的首个CRF_BC,也是继CRF60_BC之后在欧洲鉴定出的第二个CRF_BC,两者在系统发育上均与巴西C亚型毒株相关。