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中国药用植物物种莲(睡莲科)叶绿体全基因组的特征分析

Characterization the complete chloroplast genome of (Nymphaeaceae), an medicinal plant species in China.

作者信息

Guo Zhiyong, Min Jie

机构信息

The First Hospital of Nanchang, Jiangxi, China.

The Third Hospital of Nanchang, Jiangxi, China.

出版信息

Mitochondrial DNA B Resour. 2020 Jun 8;5(3):2389-2390. doi: 10.1080/23802359.2020.1775516.

Abstract

belongs to the family Nymphaeaceae that has been used as foods and medicines in China. In this study, we had been completed the complete chloroplast genome of , which is 159,930 bp in length and has four sub-regions. The complete chloroplast genome sequence of contains 89,678 bp of a large single-copy region (LSC), 22,202 bp of small single-copy region (SSC) and 25,025 bp of two inverted repeat regions (IRs). The complete chloroplast genome of is also consistent with other chloroplast genomes most plant species. The overall nucleotide composition of chloroplast genome sequence has: A (30.1%), T (30.8%), C (19.9%), G (19.2%) and the total GC content of 39.1%. Its sequence contains 127 genes, including 84 encoding genes, 35 transfer RNA genes and 8 ribosomal RNA genes. As the analysis result, the ML tree presents that clustered with belonging to the family Nymphaeaceae in genetic evolution relationship by the maximum likelihood (ML) methods.

摘要

属于睡莲科,在中国一直被用作食物和药物。在本研究中,我们已完成了[物种名称]的完整叶绿体基因组测序,其长度为159,930 bp,有四个亚区。[物种名称]的完整叶绿体基因组序列包含一个89,678 bp的大单拷贝区域(LSC)、一个22,202 bp的小单拷贝区域(SSC)和两个25,025 bp的反向重复区域(IR)。[物种名称]的完整叶绿体基因组也与大多数植物物种的其他叶绿体基因组一致。叶绿体基因组序列的总体核苷酸组成为:A(30.1%)、T(30.8%)、C(19.9%)、G(19.2%),总GC含量为39.1%。其序列包含127个基因,包括84个编码基因、35个转运RNA基因和8个核糖体RNA基因。分析结果显示,通过最大似然(ML)方法构建的ML树表明,[物种名称]在遗传进化关系上与睡莲科的[另一物种名称]聚类在一起。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7ac4/7782232/43dc682ed4f4/TMDN_A_1775516_F0001_C.jpg

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