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(硬骨鱼纲:鲤科)线粒体全基因组的特征分析及系统发育分析

Characterization and phylogenetic analysis of the complete mitochondrial genome of (Teleost: Cyprinidae).

作者信息

Zhou Lei, Huang Shihui, Kuang Tianxu, Li Yusen

机构信息

Joint Laboratory of Guangdong Province and Hong Kong Region on Marine Bioresource Conservation and Exploitation, College of Marine Sciences, South China Agricultural University, Guangzhou, China.

Guangdong Laboratory for Lingnan Modern Agriculture, Guangzhou, China.

出版信息

Mitochondrial DNA B Resour. 2020 Jul 11;5(3):2765-2766. doi: 10.1080/23802359.2020.1788448.

DOI:10.1080/23802359.2020.1788448
PMID:33457941
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7781973/
Abstract

In this study, we assembled the complete mitochondrial genome of based on high-throughput Illumina sequencing. The complete mitochondrial genome of was 16,598 bp in size. It was made up of 13 protein-coding genes, 22 tRNA genes, 2 rRNA genes, and 1 control region. The overall base composition included A(32.38%), T(26.08%), C(26.32%) and G(15.22%). The phylogenetic tree was conducted to provide a relationship within Labeoninae based on the maximum likelihood (ML) method. The ML tree demonstrated this species had the closest relationship with . These results should help to better understand the phylogenetic evolution of Labeoninae.

摘要

在本研究中,我们基于高通量Illumina测序组装了[物种名称]的完整线粒体基因组。[物种名称]的完整线粒体基因组大小为16,598 bp。它由13个蛋白质编码基因、22个tRNA基因、2个rRNA基因和1个控制区组成。总体碱基组成为A(32.38%)、T(26.08%)、C(26.32%)和G(15.22%)。基于最大似然法构建系统发育树以揭示野鲮亚科内的关系。最大似然树表明该物种与[另一物种名称]关系最为密切。这些结果有助于更好地理解野鲮亚科的系统发育进化。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a9bd/7781973/25386d55f7c1/TMDN_A_1788448_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a9bd/7781973/25386d55f7c1/TMDN_A_1788448_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a9bd/7781973/25386d55f7c1/TMDN_A_1788448_F0001_C.jpg

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本文引用的文献

1
Characterization of the Complete Mitochondrial Genome Sequences of Three Croakers (Perciformes, Sciaenidae) and Novel Insights into the Phylogenetics.三种石首鱼科鱼类(鲈形目,石首鱼科)的完整线粒体基因组序列特征及系统发育学新见解。
Int J Mol Sci. 2018 Jun 12;19(6):1741. doi: 10.3390/ijms19061741.
2
Molecular systematics of the Labeonini inhabiting the karst regions in southwest China (Teleostei, Cypriniformes).中国西南部喀斯特地区野鲮亚科鱼类(硬骨鱼纲,鲤形目)的分子系统学研究
Zookeys. 2016 Aug 23(612):133-48. doi: 10.3897/zookeys.612.9085. eCollection 2016.
3
Animal mitochondrial genomes.
动物线粒体基因组。
Nucleic Acids Res. 1999 Apr 15;27(8):1767-80. doi: 10.1093/nar/27.8.1767.