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(吴应祥 & 陈心启)陈心启 & 刘仲健的全叶绿体基因组序列(兰科):中国西南地区的一种濒危(EN)植物物种。

Complete plastome sequence of var. (Y.S.Wu & S.C.Chen) S.C.Chen & Z.J.Liu (Orchidaceae): an endangered (EN) plant species in Southwest China.

作者信息

Chen Da-Juan, Wang Hong-Xin, Zhu Zhi-Xin, Wang Hua-Feng

机构信息

Hainan Key Laboratory for Sustainable Utilization of Tropical Bioresources, College of Tropical Crops, Hainan University, Haikou, China.

出版信息

Mitochondrial DNA B Resour. 2020 Aug 17;5(3):3180-3181. doi: 10.1080/23802359.2020.1810157.

DOI:10.1080/23802359.2020.1810157
PMID:33458104
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7782035/
Abstract

(Orchidaceae) has been ranked as an endangered (EN) herb species in China. In this study, we report and characterize the complete plastid genome sequence of var. in order to provide genomic resources helpful for promoting its conservation and garden utilization. The complete plastome is 150,198 bp in length and contains the typical quadripartite structure of angiosperm, including two Inverted Repeat (IRs) regions of 25,682 bp, a Large Single-Copy (LSC) region of 85,035 bp and a Small Single-Copy (SSC) region of 13,799 bp. The plastome contains 111 genes, consisting of 77 unique protein-coding genes, 30 unique tRNA gene and 4 unique rRNA genes. The overall A/T content in the plastome of var. is 62.90%. The complete plastome sequence of var. will provide a useful resource for the conservation and garden utilization of this species as well as for the phylogenetic studies of Orchidaceae.

摘要

(兰科)在中国已被列为濒危(EN)草本物种。在本研究中,我们报道并描述了[具体品种]变种的完整质体基因组序列,以便提供有助于促进其保护和园林利用的基因组资源。完整的质体基因组长度为150,198 bp,包含被子植物典型的四分体结构,包括两个25,682 bp的反向重复(IR)区域、一个85,035 bp的大单拷贝(LSC)区域和一个13,799 bp的小单拷贝(SSC)区域。质体基因组包含111个基因,由77个独特的蛋白质编码基因、30个独特的tRNA基因和4个独特的rRNA基因组成。[具体品种]变种质体基因组中的总体A/T含量为62.90%。[具体品种]变种的完整质体基因组序列将为该物种的保护和园林利用以及兰科的系统发育研究提供有用的资源。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6caa/7782035/616c792d4952/TMDN_A_1810157_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6caa/7782035/616c792d4952/TMDN_A_1810157_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6caa/7782035/616c792d4952/TMDN_A_1810157_F0001_B.jpg

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Complete plastome sequence of var. (Y.S.Wu & S.C.Chen) S.C.Chen & Z.J.Liu (Orchidaceae): an endangered (EN) plant species in Southwest China.(吴应祥 & 陈心启)陈心启 & 刘仲健的全叶绿体基因组序列(兰科):中国西南地区的一种濒危(EN)植物物种。
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本文引用的文献

1
Complete plastome sequence of (Asparagaceae): a species considered "Vulnerable" in Southeast Asia.天门冬科(Asparagaceae)某物种的完整质体基因组序列:一种在东南亚被视为“易危”的物种。
Mitochondrial DNA B Resour. 2018 May 21;3(2):620-621. doi: 10.1080/23802359.2018.1473740.
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Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads--a baiting and iterative mapping approach.直接从基因组下一代测序读段重建线粒体基因组——一种诱饵和迭代映射方法。
Nucleic Acids Res. 2013 Jul;41(13):e129. doi: 10.1093/nar/gkt371. Epub 2013 May 9.
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Complete chloroplast genome of the genus Cymbidium: lights into the species identification, phylogenetic implications and population genetic analyses.
蝴蝶兰属植物完整叶绿体基因组:物种鉴定、系统发育意义和种群遗传分析的启示。
BMC Evol Biol. 2013 Apr 18;13:84. doi: 10.1186/1471-2148-13-84.
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