Zhu Zhi-Xin, Mu Wei-Xue, Wang Jian-Hua, Zhang Jin-Ran, Zhao Kun-Kun, Ross Friedman Cynthia, Wang Hua-Feng
Hainan Key Laboratory for Sustainable Utilization of Tropical Bioresources, Institute of Tropical Agriculture and Forestry, Hainan University, Haikou, China.
BGI-Shenzhen, Shenzhen, China.
Mitochondrial DNA B Resour. 2018 May 21;3(2):620-621. doi: 10.1080/23802359.2018.1473740.
(Asparagaceae) is a treelike plant ranging from 3 to 10 m tall. It grows in low-elevation forests (0-300 m) having dry and sandy soils. It is distributed in Southern Hainan Island in China and other Southeast Asian countries (e.g. Cambodia, Laos, Thailand and Vietnam). The dried resin can be used medicinally as a substitute for that of . It has been ranked as a Vulnerable (VU) species in China. Here we report and characterize the complete plastid genome sequence of . The complete plastome is 156,697 bp in length. It contains the typical structure and gene content of angiosperm plastomes, including two Inverted Repeat (IR) regions of 26,526 bp, a Large Single-Copy (LSC) region of 84,988 bp and a Small Single-Copy (SSC) region of 18,657 bp. The plastome contains 113 genes, consisting of 76 unique protein-coding genes, 30 unique tRNA genes, four unique rRNA genes and three pseudogenes (i.e. ). The overall A/T content in the plastome of is 62.4%. We performed phylogenetic analyses using the entire plastome, including spacers, introns, etc., and we determined that and were closely related. The complete plastome sequence of will provide a useful resource for the conservation genetics of this species as well as for phylogenetic studies in Asparagales.
(天门冬科)是一种树状植物,高3至10米。它生长在低海拔森林(0 - 300米)中,土壤干燥且多沙。它分布于中国海南岛南部以及其他东南亚国家(如柬埔寨、老挝、泰国和越南)。其干燥树脂可药用,作为[某种植物名称]树脂的替代品。它在中国被列为易危(VU)物种。在此我们报道并描述了[植物名称]的完整质体基因组序列。完整的质体基因组长度为156,697 bp。它包含被子植物质体基因组的典型结构和基因内容,包括两个26,526 bp的反向重复(IR)区域、一个84,988 bp的大单拷贝(LSC)区域和一个18,657 bp 的小单拷贝(SSC)区域。质体基因组包含113个基因,由76个独特的蛋白质编码基因、30个独特的tRNA基因、4个独特的rRNA基因和3个假基因(即[假基因名称])组成。[植物名称]质体基因组的总体A/T含量为62.4%。我们使用整个质体基因组进行了系统发育分析,包括间隔区、内含子等,并且确定[植物名称]与[另一植物名称]密切相关。[植物名称]的完整质体基因组序列将为该物种的保护遗传学以及天门冬目的系统发育研究提供有用资源。