基于PacBio Sequel II平台的准噶尔锦鸡儿叶绿体全基因组序列
Complete chloroplast genome sequence of Schrenk from PacBio Sequel II Platform.
作者信息
Gai Zhong-Shuai, Liao Rui, Jiang Zhen-Bo, Jiao Pei-Pei, Zhang Shan-He, Qin Rui, Liu Hong, Wu Zhi-Hua, Li Zhi-Jun
机构信息
Key Laboratory of Protection and Utilization of Biological Resources in Tarim Basin Xinjiang Production and Construction Corps, Tarim University, Alar, China.
Desert Poplar Research Center of Tarim University, Tarim University, Alar, China.
出版信息
Mitochondrial DNA B Resour. 2020 Sep 29;5(3):3452-3454. doi: 10.1080/23802359.2020.1824593.
Schrenk plays an important role on ecological services in desert areas. The complete chloroplast genome was reported in this study using the PacBio Sequel II Platform. The chloroplast genome with a total size of 157,856 bp consists of two inverted repeats (IR, 27,673 bp) separated by a large single-copy region (LSC, 85,867 bp) and a small single-copy region (SSC, 16,645 bp). Further annotation revealed the chloroplast genome contains 111 genes, including 78 protein-coding genes, 29 tRNA genes, and 4 rRNA genes. A total of 151 simple sequence repeats (SSRs) were identified in the chloroplast genome. This information will be useful for study on the evolution and genetic diversity of in the future.
梭梭树在沙漠地区的生态服务中发挥着重要作用。本研究利用PacBio Sequel II平台报道了其完整的叶绿体基因组。该叶绿体基因组全长157,856 bp，由两个反向重复序列（IR，27,673 bp）组成，中间被一个大单拷贝区域（LSC，85,867 bp）和一个小单拷贝区域（SSC，16,645 bp）隔开。进一步注释显示，该叶绿体基因组包含111个基因，其中包括78个蛋白质编码基因、29个tRNA基因和4个rRNA基因。在叶绿体基因组中总共鉴定出151个简单序列重复（SSR）。这些信息将有助于未来对梭梭树的进化和遗传多样性进行研究。
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