竹亚科变种的完整叶绿体基因组序列。
The complete chloroplast genome sequence of var (Bambusodae).
作者信息
Chen Liguang, Zhang Yangyang, Fan Lili, Chen Lingyan, He Tianyou, Zheng Yushan
机构信息
College of Forestry, Fujian Agriculture and Forestry University, Fuzhou, P. R. China.
College of Arts & College of Landscape Architecture, Fujian Agriculture and Forestry University, Fuzhou, Fujian, P. R. China.
出版信息
Mitochondrial DNA B Resour. 2020 Oct 5;5(3):3467-3468. doi: 10.1080/23802359.2020.1823275.
var is mainly distributed in South China to Southwest China, growing on hillsides or river banks. In the current study, we sequenced the complete chloroplast genome of var. and reported for the first time. The genome is 139,402 bp in total length, include a large single-copy (LSC) region of 82,936 bp, small single-copy (SSC) region of 12,868 bp, a pair of invert repeats (IR) regions of 21,799 bp. Plastid genome contains 132 genes, 85 protein-coding genes, 39 tRNA genes, and 8 rRNA genes. Phylogenetic analysis based on 25 chloroplast genomes indicates that var is closely related to , and in Bambusodae.
var主要分布于中国华南至西南地区，生长在山坡或河岸。在本研究中，我们对var.的叶绿体全基因组进行了测序并首次报道。该基因组全长139,402 bp，包括一个82,936 bp的大单拷贝（LSC）区域、一个12,868 bp的小单拷贝（SSC）区域和一对21,799 bp的反向重复（IR）区域。质体基因组包含132个基因，85个蛋白质编码基因、39个tRNA基因和8个rRNA基因。基于25个叶绿体基因组的系统发育分析表明，var与竹亚科中的、和密切相关。
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