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基于线粒体基因组推断的军曹松鼠鱼(金眼鲷目:金鳞鱼科)的系统发育位置。

The phylogenomic position of the sabre squirrelfish (beryciformes: holocentridae) inferred from the mitochondrial genome.

作者信息

Chen Hao, Zhou Haolang, Wang Xin, Chen Xiao

机构信息

Department of Marine Biotechnology, School of Life Science, Wenzhou Medical University, Wenzhou, Zhejiang, P.R. China.

Guangxi Key Lab for Mangrove Conservation and Utilization, Guangxi Mangrove Research Center, Beihai, Guangxi, P.R. China.

出版信息

Mitochondrial DNA B Resour. 2016 Sep 5;1(1):617-618. doi: 10.1080/23802359.2016.1209099.

DOI:10.1080/23802359.2016.1209099
PMID:33473571
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7800559/
Abstract

In this study, the complete mitochondrial genome of the sabre squirrelfish , one member of family Holocentridae, is determined. It is a circular molecule whose length reaches 16,548 bp, consisting of 37 genes with typical order to most Chinese vertebrates. The nucleotide composition is: 30.3% A, 29.0% C, 15.3% G and 25.5% T. Located in gene junctions, there are total 39 bp short intergenic spaces and 30 bp overlaps. Two initial codons (GTG and ATG) and three terminal codons (TAG, AGG and TAA/T) are used in the protein-coding genes. Twenty-two tRNAs range from 67 to 74 bp. The control region (865 bp) is located between the tRNA- and tRNA- genes. The phylogenetic results show that is sister to .

摘要

在本研究中,确定了金鳞鱼科成员之一的尖牙松球鱼的完整线粒体基因组。它是一个环状分子,长度达16548 bp,由37个基因组成,其排列顺序与大多数中国脊椎动物的典型顺序相同。核苷酸组成为:A占30.3%,C占29.0%,G占15.3%,T占25.5%。位于基因连接处的基因间隔共有39 bp的短间隔序列和30 bp的重叠序列。蛋白质编码基因使用了两个起始密码子(GTG和ATG)和三个终止密码子(TAG、AGG和TAA/T)。22个tRNA的长度在67至74 bp之间。控制区(865 bp)位于tRNA-和tRNA-基因之间。系统发育结果表明, 与 是姐妹关系。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4c01/7800559/9f9d7df04db1/TMDN_A_1209099_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4c01/7800559/9f9d7df04db1/TMDN_A_1209099_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4c01/7800559/9f9d7df04db1/TMDN_A_1209099_F0001_B.jpg

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本文引用的文献

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Complete mitochondrial genome and the phylogenetic position of the Blotchy swell shark Cephaloscyllium umbratile.斑点皱鳃鲨(Cephaloscyllium umbratile)的完整线粒体基因组及系统发育位置
Mitochondrial DNA A DNA Mapp Seq Anal. 2016 Jul;27(4):3045-7. doi: 10.3109/19401736.2015.1063127. Epub 2015 Aug 10.