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基于系统发育分析的亚洲棕榈狸( )线粒体全基因组

The complete mitochondrial genome of Asian palm civet () with phylogenetic consideration.

作者信息

Kunteepuram Vaishnavi, Sreenivas Ara, Tabasum Wajeeda, Challagandla Anil K, Gaur Ajay

机构信息

Laboratory for the Conservation of Endangered Species, CSIR - Centre for Cellular and Molecular Biology (CCMB), Hyderabad, India.

出版信息

Mitochondrial DNA B Resour. 2018 Feb 26;3(1):294-295. doi: 10.1080/23802359.2018.1443853.

DOI:10.1080/23802359.2018.1443853
PMID:33474149
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7800665/
Abstract

Asian palm civet () is one of the smallest palm civet which is least studied. Here, we report the first complete mitochondrial (mt) genome of Asian palm civet (). The circular mt genome with a length of 16,706 bp contained 1 control region, 2 rRNAs, 13 protein-coding genes, and 22 tRNAs. Overall base composition of the complete mt DNA was 33.7% A, 30.5% T, 22.9% C, and 12.9% G. All the genes in mt genome of Asian palm civet () were distributed on the H-strand, except and eight tRNA genes encoded on the L-strand. Maximum likelihood (ML) and Bayesian inference (BI) methods were used to infer the phylogenetic relationship of . The phylogenetic analysis shows that all species from the family Viverridae cluster together, in which exhibits the closest relationship with .

摘要

亚洲棕榈狸()是研究最少的最小的棕榈狸之一。在此,我们报道了亚洲棕榈狸()的首个完整线粒体(mt)基因组。该环状mt基因组长度为16,706 bp,包含1个控制区、2个rRNA、13个蛋白质编码基因和22个tRNA。完整mt DNA的总体碱基组成为33.7%A、30.5%T、22.9%C和12.9%G。亚洲棕榈狸()mt基因组中的所有基因都分布在H链上,除了和8个编码在L链上的tRNA基因。使用最大似然法(ML)和贝叶斯推断法(BI)来推断的系统发育关系。系统发育分析表明,灵猫科的所有物种聚在一起,其中与关系最为密切。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/df63/7800665/e8aed7bc82ef/TMDN_A_1443853_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/df63/7800665/e8aed7bc82ef/TMDN_A_1443853_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/df63/7800665/e8aed7bc82ef/TMDN_A_1443853_F0001_B.jpg

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本文引用的文献

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The complete mitochondrial genome of the Spotted Linsang, Prionodon pardicolor, the first representative from the family Prionodontidae (Mammalia, Carnivora).斑林狸(Prionodon pardicolor)的完整线粒体基因组,这是林狸科(哺乳纲,食肉目)的首个代表物种。
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