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野生四倍体马铃薯近缘种的叶绿体基因组序列

Chloroplast genome sequence of the wild tetraploid potato relative .

作者信息

Park Tae-Ho

机构信息

Department of Horticulture, Daegu University, Gyeongsan, South Korea.

出版信息

Mitochondrial DNA B Resour. 2018 Apr 1;3(1):416-418. doi: 10.1080/23802359.2018.1456983.

Abstract

is a wild tuber-bearing species belonging to Solanaceae family. The complete chloroplast genome of was constituted by assembly using a small amount of whole genome sequencing data. The chloroplast genome of was the circular DNA molecule with a length of 155,567 bp and consisted of 86,007 bp of large single copy, 18,374 bp of small single copy, and 25,593 bp of a pair of inverted repeat regions. A total of 158 genes were annotated including 105 protein-coding genes, 45 tRNA genes, and eight rRNA genes. Maximum likelihood phylogenetic analysis with 25 Solanaceae species revealed that is the most closely grouped with .

摘要

是一种属于茄科的野生块茎物种。通过使用少量全基因组测序数据进行组装,构建了其完整的叶绿体基因组。的叶绿体基因组是一个长度为155,567 bp的环状DNA分子,由86,007 bp的大单拷贝、18,374 bp的小单拷贝和25,593 bp的一对反向重复区域组成。总共注释了158个基因,包括105个蛋白质编码基因、45个tRNA基因和8个rRNA基因。对25个茄科物种进行的最大似然系统发育分析表明,与最紧密地聚在一起。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a7c8/7799944/ca2907275f1c/TMDN_A_1456983_F0001_B.jpg

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