ISEM, Université de Montpellier, CNRS, IRD, EPHE, Montpellier, France; Department of Botany & Biodiversity Research, University of Vienna, Vienna, Austria.
ISEM, Université de Montpellier, CNRS, IRD, EPHE, Montpellier, France; Bioinformatics Research Centre, Aarhus University, C.F. Møllers Alle 8, 8000 Aarhus, Denmark.
Curr Biol. 2021 Mar 22;31(6):1303-1310.e4. doi: 10.1016/j.cub.2020.12.040. Epub 2021 Jan 20.
Due to their limited ranges and inherent isolation, island species have long been recognized as crucial systems for tackling a range of evolutionary questions, including in the early study of speciation. Such species have been less studied in the understanding of the evolutionary forces driving DNA sequence evolution. Island species usually have lower census population sizes (N) than continental species and, supposedly, lower effective population sizes (Ne). Given that both the rates of change caused by genetic drift and by selection are dependent upon Ne, island species are theoretically expected to exhibit (1) lower genetic diversity, (2) less effective natural selection against slightly deleterious mutations, and (3) a lower rate of adaptive evolution. Here, we have used a large set of newly sequenced and published whole-genome sequences of Passerida species (14 insular and 11 continental) to test these predictions. We confirm that island species exhibit lower census size and Ne, supporting the hypothesis that the smaller area available on islands constrains the upper bound of Ne. In the insular species, we find lower nucleotide diversity in coding regions, higher ratios of non-synonymous to synonymous polymorphisms, and lower adaptive substitution rates. Our results provide robust evidence that the lower Ne experienced by island species has affected both the ability of natural selection to efficiently remove weakly deleterious mutations and also the adaptive potential of island species, therefore providing considerable empirical support for the nearly neutral theory. We discuss the implications for both evolutionary and conservation biology.
由于其有限的分布范围和固有隔离,岛屿物种长期以来一直被认为是解决一系列进化问题的关键系统,包括在早期的物种形成研究中。在理解驱动 DNA 序列进化的进化力量方面,对这些物种的研究较少。岛屿物种的种群数量(N)通常低于大陆物种,据推测,其有效种群数量(Ne)也较低。鉴于遗传漂变和选择引起的变化率都取决于 Ne,理论上预计岛屿物种将表现出(1)较低的遗传多样性,(2)对轻微有害突变的自然选择效果较弱,以及(3)适应性进化的速度较低。在这里,我们使用了一组新测序和已发表的 Passerida 物种(14 个岛屿和 11 个大陆)的全基因组序列来检验这些预测。我们证实岛屿物种的种群数量和 Ne 较低,支持了这样一种假设,即岛屿上可用的较小面积限制了 Ne 的上限。在岛屿物种中,我们发现编码区域的核苷酸多样性较低,非同义与同义多态性的比值较高,以及适应性替代率较低。我们的研究结果提供了强有力的证据,表明岛屿物种经历的较低 Ne 不仅影响了自然选择有效去除弱有害突变的能力,还影响了岛屿物种的适应潜力,因此为几乎中性理论提供了相当多的经验支持。我们讨论了这对进化和保护生物学的影响。