Laboratory of Marine Biology and Ecology, Third Institute of Oceanography, Ministry of Natural Resources, 178 Daxue Road, Xiamen 361005, PR China.
College of Marine Life Sciences, Ocean University of China, Qingdao 266003, PR China.
Int J Syst Evol Microbiol. 2021 Feb;71(2). doi: 10.1099/ijsem.0.004647.
A Gram-strain-negative, facultatively anaerobic, motile, rod-shaped and flagellated marine bacterium, designated SM6, was isolated from surface seawater collected in Daya Bay (Guangdong, China). Phylogenetic analysis based on 16S rRNA gene sequences, multilocus sequence analysis, phylogenomic analysis of single-copy gene families and whole genome data showed that strain SM6 belonged to the genus . The closest phylogenetic relatives of SM6 were MSSRF60 (97.38 % 16S rRNA gene sequence pairwise similarity), R-40492 (97.27 %), ATCC 35048 (97.21 %) and LC2-047 (97.3 %). Growth of strain SM6 occurred at 10-45 °C (optimum 30 °C), at pH 6.0-9.0 (optimum 6.0) and in the presence of 0-10 % (w/v) NaCl (optimum 3-8 %). The predominant fatty acids (>10 %) were summed feature 3 (C 7 or/and C 6), C and summed feature 8 (C 7 or/and C 6). The DNA G+C content of the assembled genomic sequences was 47.37 % for strain SM6. Average nucleotide identity values between SM6 and its reference species were lower than the threshold for species delineation (95-96 %); DNA-DNA hybridization further showed that the strains shared less than 70 % similarity. On the basis of evidence from the present polyphasic study, strain SM6 is considered to represent a novel species of the genus , for which the name sp. nov. is proposed. The type strain is SM6 (=KCTC 82076=MCCC 1K04327 ).
一株革兰氏阴性、兼性厌氧、运动、杆状和鞭毛的海洋细菌,被命名为 SM6,从中国广东大亚湾采集的表层海水中分离得到。基于 16S rRNA 基因序列、多位点序列分析、单拷贝基因家族的系统基因组分析和全基因组数据的系统发育分析,菌株 SM6 属于.SM6 的最接近的系统发育近缘种为 MSSRF60(97.38%的 16S rRNA 基因序列相似性)、R-40492(97.27%)、ATCC 35048(97.21%)和 LC2-047(97.3%)。SM6 菌株的生长温度为 10-45°C(最佳温度 30°C),pH 值为 6.0-9.0(最佳 pH 值 6.0),盐度为 0-10%(w/v)(最佳盐度为 3-8%)。优势脂肪酸(>10%)为 sumFeature3(C7 或/和 C6)、C 和 sumFeature8(C7 或/和 C6)。SM6 菌株的全基因组序列的 DNA G+C 含量为 47.37%。SM6 与参考种之间的平均核苷酸同一性值低于种系划分的阈值(95-96%);DNA-DNA 杂交进一步表明,这些菌株的相似度低于 70%。基于本多相研究的证据,菌株 SM6 被认为代表了一个新的属种,建议命名为. sp. nov.。模式菌株为 SM6(=KCTC 82076=MCCC 1K04327)。