Redfield C, Dobson C M
Inorganic Chemistry Laboratory, University of Oxford, England.
Biochemistry. 1988 Jan 12;27(1):122-36. doi: 10.1021/bi00401a020.
Assignments for 1H NMR resonances of 121 of the 129 residues of hen egg white lysozyme have been obtained by sequence-specific methods. Spin systems were identified with phase-sensitive two-dimensional (2-D) correlated spectroscopy and single and double relayed coherence transfer spectroscopy. For key types of amino acid residues, particularly alanine, threonine, valine, and glycine, complete spin systems were identified. For other residues a less complete definition of the spin system was found to be adequate for the purpose of sequential assignment. Sequence-specific assignments were achieved by phase-sensitive 2-D nuclear Overhauser enhancement spectroscopy (NOESY). Exploitation of the wide range of hydrogen exchange rates found in lysozyme was a useful approach to overcoming the problem of spectral overlap. The sequential assignment was built up from 21 peptide segments ranging in length from 2 to 13 residues. The NOESY spectra were also used to provide information about the secondary structure of the protein in solution. Three helical regions and two regions of beta-sheet were identified from the NOESY data; these regions are identical with those found in the X-ray structure of hen lysozyme. Slowly exchanging amides are generally correlated with hydrogen bonding identified in the X-ray structure; a number of exceptions to this general trend were, however, found. The results presented in this paper indicate that highly detailed information can be obtained from 2-D NMR spectra of a protein that is significantly larger than those studied previously.
利用序列特异性方法已完成了对鸡蛋清溶菌酶129个残基中121个残基的¹H NMR共振信号的归属。通过相敏二维(2-D)相关光谱以及单重和双重接力相干转移光谱鉴定了自旋系统。对于关键类型的氨基酸残基,特别是丙氨酸、苏氨酸、缬氨酸和甘氨酸,确定了完整的自旋系统。对于其他残基,发现对自旋系统的定义不太完整也足以进行序列归属。通过相敏二维核Overhauser增强光谱(NOESY)实现了序列特异性归属。利用溶菌酶中广泛的氢交换速率是克服光谱重叠问题的一种有效方法。序列归属是基于21个长度从2到13个残基不等的肽段建立起来的。NOESY光谱还用于提供有关溶液中蛋白质二级结构的信息。从NOESY数据中确定了三个螺旋区域和两个β-折叠区域;这些区域与在鸡蛋清溶菌酶的X射线结构中发现的区域相同。缓慢交换的酰胺通常与X射线结构中确定的氢键相关;然而,发现了一些偏离这一普遍趋势的例外情况。本文给出的结果表明,从比先前研究的蛋白质大得多的蛋白质的二维NMR光谱中可以获得高度详细的信息。