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基于胸部CT图像的少样本COVID-19诊断的动量对比学习

Momentum contrastive learning for few-shot COVID-19 diagnosis from chest CT images.

作者信息

Chen Xiaocong, Yao Lina, Zhou Tao, Dong Jinming, Zhang Yu

机构信息

School of Computer Science and Engineering at University of New South Wales, NSW 2052, Australia.

Inception Institute of Artificial Intelligence, Abu Dhabi, UAE.

出版信息

Pattern Recognit. 2021 May;113:107826. doi: 10.1016/j.patcog.2021.107826. Epub 2021 Jan 16.

DOI:10.1016/j.patcog.2021.107826
PMID:33518813
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7833525/
Abstract

The current pandemic, caused by the outbreak of a novel coronavirus (COVID-19) in December 2019, has led to a global emergency that has significantly impacted economies, healthcare systems and personal wellbeing all around the world. Controlling the rapidly evolving disease requires highly sensitive and specific diagnostics. While RT-PCR is the most commonly used, it can take up to eight hours, and requires significant effort from healthcare professionals. As such, there is a critical need for a quick and automatic diagnostic system. Diagnosis from chest CT images is a promising direction. However, current studies are limited by the lack of sufficient training samples, as acquiring annotated CT images is time-consuming. To this end, we propose a new deep learning algorithm for the automated diagnosis of COVID-19, which only requires a few samples for training. Specifically, we use contrastive learning to train an encoder which can capture expressive feature representations on large and publicly available lung datasets and adopt the prototypical network for classification. We validate the efficacy of the proposed model in comparison with other competing methods on two publicly available and annotated COVID-19 CT datasets. Our results demonstrate the superior performance of our model for the accurate diagnosis of COVID-19 based on chest CT images.

摘要

当前这场由2019年12月新型冠状病毒(COVID-19)爆发引发的大流行已导致全球紧急状况,对世界各地的经济、医疗系统和个人福祉产生了重大影响。控制这种迅速演变的疾病需要高度灵敏和特异的诊断方法。虽然逆转录聚合酶链反应(RT-PCR)是最常用的方法,但它可能需要长达八个小时,并且需要医护人员付出巨大努力。因此,迫切需要一种快速且自动的诊断系统。通过胸部CT图像进行诊断是一个很有前景的方向。然而,目前的研究受到缺乏足够训练样本的限制,因为获取标注的CT图像很耗时。为此,我们提出了一种用于COVID-19自动诊断的新深度学习算法,该算法仅需少量样本进行训练。具体而言,我们使用对比学习来训练一个编码器,该编码器能够在大型且公开可用的肺部数据集上捕捉有表现力的特征表示,并采用原型网络进行分类。我们在两个公开可用且标注的COVID-19 CT数据集上与其他竞争方法进行比较,验证了所提出模型的有效性。我们的结果证明了我们的模型在基于胸部CT图像准确诊断COVID-19方面的卓越性能。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1a6e/7833525/2944c9c0179e/gr3_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1a6e/7833525/132285f2b5f8/gr1_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1a6e/7833525/15e9a9ec0432/gr2_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1a6e/7833525/11103862d88c/gr4_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1a6e/7833525/2944c9c0179e/gr3_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1a6e/7833525/132285f2b5f8/gr1_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1a6e/7833525/15e9a9ec0432/gr2_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1a6e/7833525/11103862d88c/gr4_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1a6e/7833525/2944c9c0179e/gr3_lrg.jpg

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