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‘高大男孩’(冬青科杂交种)的完整叶绿体基因组。

The complete chloroplast genome of 'Tall Boy', × (Aquifoliaceae).

作者信息

Zhang Fan, Zhou Yanwei, Chen Hong, Li Naiwei, Wang Chuanyong, Lu Xiaoqing, Li Yunlong

机构信息

Jiangsu Key Laboratory for the Research and Utilization of Plant Resources, Institute of Botany, Jiangsu Province and Chinese Academy of Sciences, Nanjing, Jiangsu, China.

出版信息

Mitochondrial DNA B Resour. 2021 Jan 19;6(1):229-230. doi: 10.1080/23802359.2020.1852898.

DOI:10.1080/23802359.2020.1852898
PMID:33537451
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7832594/
Abstract

Thecomplete chloroplast (cp) genome of 'Tall Boy', an important economic plant with ornamental and ecological values, was sequenced to investigate its phylogenetic relationship. The entire cp genome of 'Tall Boy' was 157,527 bp in length with 37.65% overall GC content, including a large single-copy (LSC) region of 87,044 bp and a small single-copy (SSC) region of 18,429 bp, which were separated by a pair of inverted repeats (IRs) of 52,054 bp. The cp genome contained 135 genes, including 90 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. Phylogenetic analysis based on whole cp genome sequences showed that 'Tall Boy' is closest to Thunb. species.

摘要

为研究具有观赏和生态价值的重要经济植物“高男孩”的系统发育关系,对其完整叶绿体(cp)基因组进行了测序。“高男孩”的完整cp基因组长度为157,527 bp,总体GC含量为37.65%,包括一个87,044 bp的大单拷贝(LSC)区域和一个18,429 bp的小单拷贝(SSC)区域,它们被一对52,054 bp的反向重复序列(IRs)隔开。该cp基因组包含135个基因,包括90个蛋白质编码基因、37个tRNA基因和8个rRNA基因。基于整个cp基因组序列的系统发育分析表明,“高男孩”与Thunb.物种关系最近。

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Maximum Likelihood Estimation of Fitness Components in Experimental Evolution.最大似然估计在实验进化中适应性成分的应用。
Genetics. 2019 Mar;211(3):1005-1017. doi: 10.1534/genetics.118.301893. Epub 2019 Jan 24.
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Integral Phylogenomic Approach over Ilex L. Species from Southern South America.基于南美洲南部冬青属物种的完整系统基因组学方法。
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GeSeq - versatile and accurate annotation of organelle genomes.GeSeq - 细胞器基因组的多功能和准确注释。
Nucleic Acids Res. 2017 Jul 3;45(W1):W6-W11. doi: 10.1093/nar/gkx391.
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Nucleic Acids Res. 2017 Feb 28;45(4):e18. doi: 10.1093/nar/gkw955.
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Chloroplast genome structure in Ilex (Aquifoliaceae).冬青属(冬青科)叶绿体基因组结构
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Molecular analyses of the genus Ilex (Aquifoliaceae) in southern South America, evidence from AFLP and ITS sequence data.分子分析南美洲南部的冬青属(冬青科),来自 AFLP 和 ITS 序列数据的证据。
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