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基于代理的模拟和几何建模在黑色素细胞增生中的图案再现。

Reproduction of patterns in melanocytic proliferations by agent-based simulation and geometric modeling.

机构信息

Institute of Information Systems Engineering, TU Wien, Vienna, Austria.

Institute of Analysis and Scientific Computing, TU Wien, Vienna, Austria.

出版信息

PLoS Comput Biol. 2021 Feb 4;17(2):e1008660. doi: 10.1371/journal.pcbi.1008660. eCollection 2021 Feb.

Abstract

Spatio-temporal patterns of melanocytic proliferations observed in vivo are important for diagnosis but the mechanisms that produce them are poorly understood. Here we present an agent-based model for simulating the emergence of the main biologic patterns found in melanocytic proliferations. Our model portrays the extracellular matrix of the dermo-epidermal junction as a two-dimensional manifold and we simulate cellular migration in terms of geometric translations driven by adhesive, repulsive and random forces. Abstracted cellular functions and melanocyte-matrix interactions are modeled as stochastic events. For identification and validation we use visual renderings of simulated cell populations in a horizontal perspective that reproduce growth patterns observed in vivo by sequential dermatoscopy and corresponding vertical views that reproduce the arrangement of melanocytes observed in histopathologic sections. Our results show that a balanced interplay of proliferation and migration produces the typical reticular pattern of nevi, whereas the globular pattern involves additional cellular mechanisms. We further demonstrate that slight variations in the three basic cellular properties proliferation, migration, and adhesion are sufficient to produce a large variety of morphological appearances of nevi. We anticipate our model to be a starting point for the reproduction of more complex scenarios that will help to establish functional connections between abstracted microscopic behavior and macroscopic patterns in all types of melanocytic proliferations including melanoma.

摘要

体内观察到的黑素细胞增生的时空模式对于诊断很重要,但产生这些模式的机制还了解甚少。本文我们提出了一个基于代理的模型,用于模拟黑素细胞增生中主要生物学模式的出现。我们的模型将表皮-真皮交界处的细胞外基质描绘为二维流形,并通过黏附、排斥和随机力驱动的几何平移来模拟细胞迁移。抽象的细胞功能和黑素细胞-基质相互作用被建模为随机事件。为了识别和验证,我们使用水平视角的模拟细胞群体的视觉渲染来复制连续皮肤镜检查观察到的体内生长模式,以及相应的垂直视角来复制组织病理学切片中观察到的黑素细胞排列。我们的结果表明,增殖和迁移的平衡相互作用产生了痣的典型网状模式,而球形模式涉及额外的细胞机制。我们进一步证明,轻微改变增殖、迁移和黏附这三个基本细胞特性足以产生大量不同形态的痣。我们预计我们的模型将成为再现更复杂情况的起点,这将有助于在所有类型的黑素细胞增生(包括黑色素瘤)中建立抽象微观行为和宏观模式之间的功能联系。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ff5c/7888658/e2f99f3fa64e/pcbi.1008660.g001.jpg

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