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一种新型与葡萄糖代谢相关的基因签名,可用于预测胶质母细胞瘤患者的总生存期。

A Novel Glucose Metabolism-Related Gene Signature for Overall Survival Prediction in Patients with Glioblastoma.

机构信息

Department of Neurosurgery, Hainan General Hospital/Hainan Affiliated Hospital of Hainan Medical University, Haikou 570311, China.

Department of Neurosurgery, Union Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan 430022, China.

出版信息

Biomed Res Int. 2021 Jan 22;2021:8872977. doi: 10.1155/2021/8872977. eCollection 2021.

Abstract

INTRODUCTION

Glioblastoma (GBM) is one of the most frequent primary intracranial malignancies, with limited treatment options and poor overall survival rates. Alternated glucose metabolism is a key metabolic feature of tumour cells, including GBM cells. However, due to high cellular heterogeneity, accurately predicting the prognosis of GBM patients using a single biomarker is difficult. Therefore, identifying a novel glucose metabolism-related biomarker signature is important and may contribute to accurate prognosis prediction for GBM patients.

METHODS

In this research, we performed gene set enrichment analysis and profiled four glucose metabolism-related gene sets containing 327 genes related to biological processes. Univariate and multivariate Cox regression analyses were specifically completed to identify genes to build a specific risk signature, and we identified ten mRNAs (B4GALT7, CHST12, G6PC2, GALE, IL13RA1, LDHB, SPAG4, STC1, TGFBI, and TPBG) within the Cox proportional hazards regression model for GBM.

RESULTS

Depending on this glucose metabolism-related gene signature, we divided patients into high-risk (with poor outcomes) and low-risk (with satisfactory outcomes) subgroups. The results of the multivariate Cox regression analysis demonstrated that the prognostic potential of this ten-gene signature is independent of clinical variables. Furthermore, we used two other GBM databases (Chinese Glioma Genome Atlas (CGGA) and REMBRANDT) to validate this model. In the functional analysis results, the risk signature was associated with almost every step of cancer progression, such as adhesion, proliferation, angiogenesis, drug resistance, and even an immune-suppressed microenvironment. Moreover, we found that IL31RA expression was significantly different between the high-risk and low-risk subgroups.

CONCLUSION

The 10 glucose metabolism-related gene risk signatures could serve as an independent prognostic factor for GBM patients and might be valuable for the clinical management of GBM patients. The differential gene IL31RA may be a potential treatment target in GBM.

摘要

简介

胶质母细胞瘤(GBM)是最常见的原发性颅内恶性肿瘤之一,治疗选择有限,总体生存率低。交替的葡萄糖代谢是肿瘤细胞(包括 GBM 细胞)的关键代谢特征。然而,由于细胞异质性高,使用单一生物标志物准确预测 GBM 患者的预后较为困难。因此,确定新的葡萄糖代谢相关生物标志物特征很重要,可能有助于准确预测 GBM 患者的预后。

方法

在这项研究中,我们进行了基因集富集分析,并对包含 327 个与生物过程相关基因的四个葡萄糖代谢相关基因集进行了分析。我们特别进行了单变量和多变量 Cox 回归分析,以确定构建特定风险特征的基因,并在 Cox 比例风险回归模型中确定了与 GBM 相关的 10 个 mRNAs(B4GALT7、CHST12、G6PC2、GALE、IL13RA1、LDHB、SPAG4、STC1、TGFBI 和 TPBG)。

结果

根据该葡萄糖代谢相关基因特征,我们将患者分为高风险(预后不良)和低风险(预后良好)亚组。多变量 Cox 回归分析的结果表明,该十基因特征的预后潜力独立于临床变量。此外,我们使用另外两个 GBM 数据库(中国脑胶质瘤基因组图谱(CGGA)和 REMBRANDT)对该模型进行了验证。在功能分析结果中,风险特征与癌症进展的几乎每一个步骤都有关,如黏附、增殖、血管生成、耐药性,甚至免疫抑制的微环境。此外,我们发现高风险和低风险亚组之间的 IL31RA 表达存在显著差异。

结论

10 个葡萄糖代谢相关基因风险特征可作为 GBM 患者的独立预后因素,可能对 GBM 患者的临床管理具有重要价值。差异基因 IL31RA 可能是 GBM 的潜在治疗靶点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7a77/7847336/9e67157efc4a/BMRI2021-8872977.001.jpg

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