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唇形科、母草科和透骨草科(唇形目)的三个完整质体基因组序列。

Three complete plastome sequences from the families of Lamiaceae, Mazaceae, and Phrymaceae (Lamiales).

作者信息

Jo Sangjin, Kim Hoe-Won, Kim Young-Kee, Cheon Se-Hwan, Joo Min-Jung, Hong Ja-Ram, Kwak Myounghai, Kim Ki-Joong

机构信息

Division of Life Sciences, Korea University, Seoul, South Korea.

Department of Plant Resources, National Institute of Biological Resources, Incheon, South Korea.

出版信息

Mitochondrial DNA B Resour. 2021 Jan 19;6(1):224-226. doi: 10.1080/23802359.2020.1861563.

Abstract

In this study, we report the first complete plastome sequence of (Lamiaceae) (MT937186). In addition, the plastome sequences of subsp. (Phrymaceae) (153,324 bp; MT948145) and (Mazaceae) (152,847 bp; MT937187) are also included. The gene orders and structures of the three plastomes are collinear with those of the typical plastome of angiosperm. The plastome size of is 154,370 bp in length and consists of a large single-copy region of 85,079 bp and a small single-copy region of 17,917 bp, which are separated by a pair of 25,687 bp-long inverted repeat regions. In addition, the plastome sizes of subsp. and are 153,324 bp and 152,847 bp, respectively. The three plastomes contain 113 genes, including 79 protein-coding, 30 tRNA, and four rRNA genes. Sixteen genes contain one intron and two genes have two introns. A total of 41 simple sequence repeat loci was identified in the plastome. Phylogenetic analysis shows that Viticoideae is a sister group of the last of Lamiaceae except Nepetoideae. The Mazaceae are a sister group of Lamiaceae, while Phrymaceae form a sister group to the Paulowniaceae-Orobanchaceae clade.

摘要

在本研究中,我们报道了唇形科(Lamiaceae)[物种名称未给出](MT937186)的首个完整质体基因组序列。此外,还纳入了透骨草科(Phrymaceae)[物种名称未给出]亚种(153,324 bp;MT948145)和马先蒿科(Mazaceae)[物种名称未给出](152,847 bp;MT937187)的质体基因组序列。这三个质体基因组的基因顺序和结构与被子植物典型质体基因组的基因顺序和结构是共线的。[物种名称未给出]的质体基因组长度为154,370 bp,由一个85,079 bp的大单拷贝区域和一个17,917 bp的小单拷贝区域组成,这两个区域被一对25,687 bp长的反向重复区域隔开。此外,[物种名称未给出]亚种和[物种名称未给出]的质体基因组大小分别为153,324 bp和152,847 bp。这三个质体基因组包含113个基因,包括79个蛋白质编码基因、30个tRNA基因和4个rRNA基因。16个基因含有一个内含子,2个基因有两个内含子。在[物种名称未给出]质体基因组中总共鉴定出41个简单序列重复位点。系统发育分析表明,葡萄叶亚科(Viticoideae)是唇形科除荆芥亚科(Nepetoideae)外最后一个分支的姐妹群。马先蒿科是唇形科的姐妹群,而透骨草科与泡桐科-列当科分支形成姐妹群。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bb99/7832541/25a8f116b5cc/TMDN_A_1861563_F0001_C.jpg

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