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酢浆草科L.的完整质体基因组序列。

Complete plastome sequence of L. (Oxalidaceae).

作者信息

Jo Sangjin, Kim Hoe-Won, Kim Young-Kee, Cheon Se-Hwan, Kim Ki-Joong

机构信息

School of Life Sciences, Korea University, Seoul, Korea.

出版信息

Mitochondrial DNA B Resour. 2016 Sep 5;1(1):609-611. doi: 10.1080/23802359.2016.1209095.

Abstract

In this study, we determined the complete plastome sequence of L. (Oxalidaceae) (NCBI acc. no. KX364202). To the best of our knowledge, this is the first reported complete plastome sequence from the order Oxalidales. The gene order and structure of the plastome are collinear with the typical plastome of land plants. The complete plastome size is 155,965 bp in length and consists of a large single copy region of 87,217 bp and a small single copy region of 17,496 bp, which are separated by a pair of 25,626-bp-long inverted repeat regions. The overall A-T content of the plastome sequence is 61.2%. The plastome contains 111 genes, of which 77 are protein-coding genes, 30 are tRNA genes, and 4 are rRNA genes. Sixteen genes contain one intron and two genes have two introns. A total of 91 simple sequence loci were identified from the genome. Phylogenetic analysis revealed that is a sister group of with 100% bootstrap support.

摘要

在本研究中,我们确定了酢浆草科(Oxalidaceae)的酢浆草属(L.)的完整质体基因组序列(NCBI登录号:KX364202)。据我们所知,这是首次报道的酢浆草目完整质体基因组序列。该质体基因组的基因顺序和结构与陆地植物的典型质体基因组共线。完整质体基因组长度为155,965 bp,由一个87,217 bp的大单拷贝区域和一个17,496 bp的小单拷贝区域组成,这两个区域被一对25,626 bp长的反向重复区域隔开。质体基因组序列的总体A-T含量为61.2%。该质体基因组包含111个基因,其中77个为蛋白质编码基因,30个为tRNA基因,4个为rRNA基因。16个基因含有一个内含子,两个基因有两个内含子。从基因组中总共鉴定出91个简单序列位点。系统发育分析表明,酢浆草属是某一物种的姐妹群,自展支持率为100%。 (注:原文中“L.”和“is a sister group of with 100% bootstrap support.”部分的“某一物种”指代不明,可能需要更多原文信息来准确翻译。)

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ed5f/7799573/c7422a0db99f/TMDN_A_1209095_F0001_C.jpg

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