Centre for Bioinformatics and Data Analysis, Medical University of Bialystok, 15-089 Bialystok, Poland.
Department of Genetics, University of Silesia in Katowice, 40-007 Katowice, Poland.
Int J Mol Sci. 2021 Feb 4;22(4):1555. doi: 10.3390/ijms22041555.
Environmental stress is one of the most important factors affecting plant growth and development. Recent studies have shown that epigenetic mechanisms, such as DNA methylation, play a key role in adapting plants to stress conditions. Here, we analyzed the dynamics of changes in the level of DNA methylation in (L.) Heynh. (Brassicaceae) under the influence of heat stress. For this purpose, whole-genome sequencing of sodium bisulfite-treated DNA was performed. The analysis was performed at seven time points, taking into account the control conditions, heat stress, and recovery to control conditions after the stress treatment was discontinued. In our study we observed decrease in the level of DNA methylation under the influence of heat stress, especially after returning to control conditions. Analysis of the gene ontology enrichment and regulatory pathways showed that genes characterized by differential DNA methylation are mainly associated with stress response, including heat stress. These are the genes encoding heat shock proteins and genes associated with translation regulation. A decrease in the level of DNA methylation in such specific sites suggests that under the influence of heat stress we observe active demethylation phenomenon rather than passive demethylation, which is not locus specific.
环境胁迫是影响植物生长和发育的最重要因素之一。最近的研究表明,表观遗传机制,如 DNA 甲基化,在植物适应胁迫条件中起着关键作用。在这里,我们分析了热胁迫对 (L.) Heynh. (Brassicaceae) 中 DNA 甲基化水平变化的动态。为此,我们对亚硫酸氢盐处理的 DNA 进行了全基因组测序。分析在七个时间点进行,考虑到对照条件、热胁迫以及在停止胁迫处理后恢复到对照条件。在我们的研究中,我们观察到在热胁迫的影响下 DNA 甲基化水平下降,尤其是在恢复到对照条件后。基因本体富集分析和调控途径分析表明,具有差异 DNA 甲基化的基因主要与应激反应有关,包括热应激。这些是编码热休克蛋白的基因和与翻译调控相关的基因。在这些特定位点上 DNA 甲基化水平的降低表明,在热胁迫的影响下,我们观察到的是活跃的去甲基化现象,而不是非特异性的被动去甲基化。