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泰冉霉素生物合成途径中多功能P450单加氧酶TamI催化迭代C─H氧化的分子基础

Molecular Basis of Iterative C─H Oxidation by TamI, a Multifunctional P450 monooxygenase from the Tirandamycin Biosynthetic Pathway.

作者信息

Newmister Sean A, Srivastava Kinshuk Raj, Espinoza Rosa V, Haatveit Kersti Caddell, Khatri Yogan, Martini Rachel M, Garcia-Borràs Marc, Podust Larissa M, Houk K N, Sherman David H

机构信息

Life Sciences Institute, University of Michigan, Ann Arbor, MI 48109, USA.

Program in Chemical Biology, University of Michigan, Ann Arbor, MI 48109, USA.

出版信息

ACS Catal. 2020 Nov 20;10(22):13445-13454. doi: 10.1021/acscatal.0c03248. Epub 2020 Nov 4.

Abstract

Biocatalysis offers an expanding and powerful strategy to construct and diversify complex molecules by C─H bond functionalization. Due to their high selectivity, enzymes have become an essential tool for C─H bond functionalization and offer complementary reactivity to small-molecule catalysts. Hemoproteins, particularly cytochromes P450, have proven effective for selective oxidation of unactivated C─H bonds. Previously, we reported the characterization of an oxidative tailoring cascade in which TamI, a multifunctional P450 functions co-dependently with the TamL flavoprotein to catalyze regio- and stereoselective hydroxylations and epoxidation to yield tirandamycin A and tirandamycin B. TamI follows a defined order including 1) C10 hydroxylation, 2) C11/C12 epoxidation, and 3) C18 hydroxylation. Here we present a structural, biochemical, and computational investigation of TamI to understand the molecular basis of its substrate binding, diverse reactivity, and specific reaction sequence. The crystal structure of TamI in complex with tirandamycin C together with molecular dynamics simulations and targeted mutagenesis suggest that hydrophobic interactions with the polyene chain of its natural substrate are critical for molecular recognition. QM calculations and molecular dynamics simulations of TamI with variant substrates provided detailed information on the molecular basis of sequential reactivity, and pattern of regio- and stereo-selectivity in catalyzing the three-step oxidative cascade.

摘要

生物催化提供了一种不断扩展且强大的策略,通过C─H键官能化来构建复杂分子并使其多样化。由于酶具有高选择性,它们已成为C─H键官能化的重要工具,并为小分子催化剂提供了互补的反应活性。血红素蛋白,特别是细胞色素P450,已被证明对未活化的C─H键的选择性氧化有效。此前,我们报道了一种氧化修饰级联反应的表征,其中多功能P450 TamI与黄素蛋白TamL共同发挥作用,催化区域和立体选择性羟基化和环氧化反应,生成替兰霉素A和替兰霉素B。TamI遵循特定的顺序,包括1)C10羟基化,2)C11/C12环氧化,以及3)C18羟基化。在此,我们对TamI进行了结构、生化和计算研究,以了解其底物结合、多样反应活性和特定反应序列的分子基础。TamI与替兰霉素C形成复合物的晶体结构,结合分子动力学模拟和定点诱变表明,与天然底物多烯链的疏水相互作用对分子识别至关重要。对具有变体底物的TamI进行量子力学计算和分子动力学模拟,提供了关于催化三步氧化级联反应中顺序反应活性、区域和立体选择性模式的分子基础的详细信息。

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