Department of Thoracic Surgery, Taizhou Hospital, No. 150 Ximen Street, Linhai, Taizhou, Zhejiang, China.
Sci Rep. 2021 Feb 11;11(1):3611. doi: 10.1038/s41598-021-83120-4.
Lung adenocarcinoma (LUAD) is the main pathological subtype of Non-small cell lung cancer. We downloaded the gene expression profile and immune-related gene set from the TCGA and ImmPort database, respectively, to establish immune-related gene pairs (IRGPs). Then, IRGPs were subjected to univariate Cox regression analysis, LASSO regression analysis, and multivariable Cox regression analysis to screen and develop an IRGPs signature. The receiver operating characteristic curve (ROC) was applied for evaluating the predicting accuracy of this signature by calculating the area under ROC (AUC) and data from the GEO set was used to validate this signature. The relationship of 22 tumor-infiltrating immune cells (TIICs) to the immune risk score was also investigated. An IRGPs signature with 8 IRGPs was constructed. The AUC for 1- and 3-year overall survival in the TCGA set was 0.867 and 0.870, respectively. Similar results were observed in the AUCs of GEO set 1, 2 and 3 (GEO set 1 [1-year: 0.819; 3-year: 0.803]; GEO set 2 [1-year: 0.834; 3-year: 0.870]; GEO set 3 [1-year: 0.955; 3-year: 0.827]). Survival analysis demonstrated high-risk LUAD patients exhibited poorer prognosis. The multivariable Cox regression indicated that the risk score was an independent prognostic factor. The immune risk score was highly associated with several TIICs (Plasma cells, memory B cells, resting memory CD4 T cells, and activated NK cells). We developed a novel IRGPs signature for predicting 1- and 3- year overall survival in LUAD, which would be helpful for prognosis assessment of LUAD.
肺腺癌(LUAD)是非小细胞肺癌的主要病理亚型。我们分别从 TCGA 和 ImmPort 数据库下载了基因表达谱和免疫相关基因集,以建立免疫相关基因对(IRGPs)。然后,对 IRGPs 进行单变量 Cox 回归分析、LASSO 回归分析和多变量 Cox 回归分析,以筛选和开发 IRGPs 特征。通过计算 ROC 曲线下的面积(AUC),应用接收者操作特征曲线(ROC)评估该特征的预测准确性,并使用 GEO 集的数据验证该特征。还研究了 22 种肿瘤浸润免疫细胞(TIICs)与免疫风险评分的关系。构建了一个包含 8 个 IRGP 的 IRGPs 特征。在 TCGA 集中,1 年和 3 年总生存率的 AUC 分别为 0.867 和 0.870。在 GEO 集 1、2 和 3 中也观察到了类似的 AUC(GEO 集 1[1 年:0.819;3 年:0.803];GEO 集 2[1 年:0.834;3 年:0.870];GEO 集 3[1 年:0.955;3 年:0.827])。生存分析表明,高风险 LUAD 患者预后较差。多变量 Cox 回归表明,风险评分是一个独立的预后因素。免疫风险评分与几种 TIICs 高度相关(浆细胞、记忆 B 细胞、静息记忆 CD4 T 细胞和活化 NK 细胞)。我们开发了一种新的用于预测 LUAD 1 年和 3 年总生存率的 IRGPs 特征,这将有助于 LUAD 的预后评估。