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颗粒体病毒 PK-1 激酶的活性依赖于一个以调节 αC 螺旋为中心的侧对侧二聚化模式。

Granulovirus PK-1 kinase activity relies on a side-to-side dimerization mode centered on the regulatory αC helix.

机构信息

School of Biological Sciences, University of Auckland, Auckland, New Zealand.

School of Biological Sciences, University of Edinburgh, Edinburgh, UK.

出版信息

Nat Commun. 2021 Feb 12;12(1):1002. doi: 10.1038/s41467-021-21191-7.

Abstract

The life cycle of Baculoviridae family insect viruses depends on the viral protein kinase, PK-1, to phosphorylate the regulatory protein, p6.9, to induce baculoviral genome release. Here, we report the crystal structure of Cydia pomenella granulovirus PK-1, which, owing to its likely ancestral origin among host cell AGC kinases, exhibits a eukaryotic protein kinase fold. PK-1 occurs as a rigid dimer, where an antiparallel arrangement of the αC helices at the dimer core stabilizes PK-1 in a closed, active conformation. Dimerization is facilitated by C-lobe:C-lobe and N-lobe:N-lobe interactions between protomers, including the domain-swapping of an N-terminal helix that crowns a contiguous β-sheet formed by the two N-lobes. PK-1 retains a dimeric conformation in solution, which is crucial for catalytic activity. Our studies raise the prospect that parallel, side-to-side dimeric arrangements that lock kinase domains in a catalytically-active conformation could function more broadly as a regulatory mechanism among eukaryotic protein kinases.

摘要

杆状病毒科昆虫病毒的生命周期依赖于病毒蛋白激酶 PK-1 将调节蛋白 p6.9 磷酸化,从而诱导杆状病毒基因组的释放。在这里,我们报告了 Cydia pomenella 颗粒体病毒 PK-1 的晶体结构,由于其可能起源于宿主细胞 AGC 激酶,因此表现出真核蛋白激酶折叠。PK-1 以刚性二聚体的形式存在,二聚体核心处的 αC 螺旋的反平行排列将 PK-1 稳定在封闭的活性构象中。通过亚基之间的 C- lobe:C- lobe 和 N- lobe:N- lobe 相互作用促进二聚化,包括在两个 N- lobe 形成的连续 β- 片层上形成冠的 N- 末端螺旋的结构域交换。PK-1 在溶液中保持二聚体构象,这对催化活性至关重要。我们的研究提出了这样一种可能性,即平行的、侧向二聚体排列将激酶结构域锁定在催化活性构象中,可能更广泛地作为真核蛋白激酶之间的一种调节机制。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2de3/7881018/674d023dfdf2/41467_2021_21191_Fig1_HTML.jpg

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