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分子内和分子间氢键的共存:水杨酸和水杨酰胺及其巯基对应物。

Coexistence of Intra- and Intermolecular Hydrogen Bonds: Salicylic Acid and Salicylamide and Their Thiol Counterparts.

机构信息

Dipartimento di Chimica Industriale, Università degli Studi di Bologna, Viale del Risorgimento 4, I-40136 Bologna, Italy.

Faculty of Chemistry, University of the Basque Country and Donostia International Physics Center (DIPC), P.K. 1072, 20080 Donostia, Spain.

出版信息

J Phys Chem A. 2021 Feb 25;125(7):1526-1539. doi: 10.1021/acs.jpca.0c11183. Epub 2021 Feb 16.

Abstract

The ωB97-XD/6-311++G(d,p) calculations were carried out on dimers and monomers of salicylic acid and salicylamide as well as on their thiol counterparts; different conformations of these species were considered. The searches through the Cambridge Structural Database were performed to find related structures; thus the analysis of results of these searches is presented. Various approaches were applied to analyze inter- and intramolecular hydrogen bonds occurring in the above-mentioned species: natural bond orbital (NBO) method, symmetry-adapted perturbation theory (SAPT) approach, the quantum theory of atoms in molecules (QTAIM), and the electron localization function (ELF) method. The results of calculations indicate a slight mutual influence of inter- and intramolecular hydrogen bonds. However, the frequent occurrence of both interactions in crystal structures indicates the importance of their coexistence. The occurrence of intramolecular chalcogen bonds for trans conformations of species analyzed is also discussed.

摘要

采用 ωB97-XD/6-311++G(d,p)方法对水杨酸和水杨酰胺的二聚体和单体及其巯基类似物进行了计算,并考虑了这些物种的不同构象。通过对剑桥结构数据库的搜索找到了相关结构,从而给出了对这些搜索结果的分析。应用了各种方法来分析上述物种中存在的分子间和分子内氢键:自然键轨道(NBO)方法、对称自适应微扰理论(SAPT)方法、分子中原子的量子理论(QTAIM)和电子定域函数(ELF)方法。计算结果表明,分子间和分子内氢键之间存在轻微的相互影响。然而,在晶体结构中经常同时出现这两种相互作用,表明它们共存的重要性。还讨论了分析的物种的反式构象中存在的分子内硫属键。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4952/9171818/c2b84e8c7ccf/jp0c11183_0007.jpg

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