Luna Emanuel, Kim Seonghoon, Gao Ya, Widmalm Göran, Im Wonpil
Departments of Biological Sciences, Chemistry, Bioengineering, and Computer Science and Engineering, Lehigh University, Bethlehem, Pennsylvania 18015, United States.
School of Computational Sciences, Korea Institute for Advanced Study, Seoul 02455, Republic of Korea.
J Phys Chem B. 2021 Mar 4;125(8):2105-2112. doi: 10.1021/acs.jpcb.0c09144. Epub 2021 Feb 18.
Lipopolysaccharides (LPS) present in the outer leaflet of Gram-negative bacterial outer membranes protect the bacteria from external threats and influence antibiotic permeability as well as immune system recognition. The structure of lipid A, the anchor of an LPS molecule to the outer membrane, can make direct influences on membrane properties. Particularly, in a Gram-negative bacterium responsible for cholera, a severe diarrheal disease, modifications of lipid A structures grant antibiotic resistance and are a primary factor that led to the current cholera pandemic. However, the difference in structural properties incurred by such modifications has not been fully explored. In this work, five symmetric bilayer systems comprised of distinct lipid A structures of LPS with O1 O-antigen were modeled and simulated to explore influences of different lipid A types on membrane properties. All-atom molecular dynamics simulations reveal that membrane properties such as hydrophobic thickness, acyl chain order parameter, and area per lipid are largely impacted by lipid A modifications due to differences in composition and acyl chain distortions. The modified lipid A is also less negatively charged, which possibly reveals a resistance mechanism to cationic antimicrobial peptide evasion. These findings present a possible explanation for 's immune system evasion properties and establish the differences between the lipid A types, which should be of use for any future study of the Gram-negative bacteria.
存在于革兰氏阴性菌外膜外小叶中的脂多糖(LPS)可保护细菌免受外部威胁,并影响抗生素渗透性以及免疫系统识别。脂多糖分子锚定在外膜上的脂质A的结构可直接影响膜的性质。特别是,在一种导致严重腹泻病霍乱的革兰氏阴性菌中,脂质A结构的改变赋予了抗生素抗性,并且是导致当前霍乱大流行的主要因素。然而,此类修饰所引起的结构性质差异尚未得到充分探索。在这项工作中,对由具有O1 O抗原的脂多糖的不同脂质A结构组成的五个对称双层系统进行了建模和模拟,以探索不同脂质A类型对膜性质的影响。全原子分子动力学模拟表明,由于组成和酰基链扭曲的差异,脂质A修饰对诸如疏水厚度、酰基链序参数和每个脂质的面积等膜性质有很大影响。修饰后的脂质A带负电荷也较少,这可能揭示了一种逃避阳离子抗菌肽的抗性机制。这些发现为霍乱弧菌的免疫系统逃避特性提供了一种可能的解释,并确定了脂质A类型之间的差异,这对于革兰氏阴性菌的任何未来研究都应是有用的。