Instituto de Ciência e Tecnologia, Universidade Federal de Alfenas, Rodovia José Aurélio Vilela, 11999, 37715-400 Poços de Caldas, Minais Gerais, Brazil.
Programa de Engenharia de Sistemas e Computação, COPPE, Universidade Federal do Rio de Janeiro, Centro de Tecnologia, Sala H-319, 21941-914 Rio de Janeiro, Rio de Janeiro, Brazil.
Phys Rev E. 2021 Jan;103(1-1):012403. doi: 10.1103/PhysRevE.103.012403.
Bacterial quorum sensing is the communication that takes place between bacteria as they secrete certain molecules into the intercellular medium that later get absorbed by the secreting cells themselves and by others. Depending on cell density, this uptake has the potential to alter gene expression and thereby affect global properties of the community. We consider the case of multiple bacterial species coexisting, referring to each one of them as a genotype and adopting the usual denomination of the molecules they collectively secrete as public goods. A crucial problem in this setting is characterizing the coevolution of genotypes as some of them secrete public goods (and pay the associated metabolic costs) while others do not but may nevertheless benefit from the available public goods. We introduce a network model to describe genotype interaction and evolution when genotype fitness depends on the production and uptake of public goods. The model comprises a random graph to summarize the possible evolutionary pathways the genotypes may take as they interact genetically with one another, and a system of coupled differential equations to characterize the behavior of genotype abundance in time. We study some simple variations of the model analytically and more complex variations computationally. Our results point to a simple trade-off affecting the long-term survival of those genotypes that do produce public goods. This trade-off involves, on the producer side, the impact of producing and that of absorbing the public good. On the nonproducer side, it involves the impact of absorbing the public good as well, now compounded by the molecular compatibility between the producer and the nonproducer. Depending on how these factors turn out, producers may or may not survive.
细菌群体感应是指细菌在分泌某些分子到细胞间介质中时发生的交流,这些分子后来被分泌细胞自身和其他细胞吸收。根据细胞密度的不同,这种吸收有可能改变基因表达,从而影响群落的整体特性。我们考虑了多种细菌共存的情况,将它们中的每一种都称为基因型,并采用它们共同分泌的分子的通常名称来表示公共物品。在这种情况下,一个关键问题是描述基因型的共同进化,因为其中一些分泌公共物品(并支付相关的代谢成本),而另一些则不分泌,但仍可能受益于可用的公共物品。我们引入了一个网络模型来描述当基因型适应性取决于公共物品的产生和吸收时,基因型之间的相互作用和进化。该模型包括一个随机图来总结基因型可能相互遗传相互作用的进化途径,以及一个耦合微分方程系统来描述基因型丰度随时间的变化。我们对模型的一些简单变体进行了分析,对更复杂的变体进行了计算。我们的结果指出了一个简单的权衡,影响了那些产生公共物品的基因型的长期生存。这种权衡涉及到生产者一方生产和吸收公共物品的影响。在非生产者一方,它还涉及到吸收公共物品的影响,现在由于生产者和非生产者之间的分子兼容性而变得更加复杂。根据这些因素的结果,生产者可能会或可能不会生存。