Chandel Vaishali, Sharma Prem Prakash, Nayar Seema A, Jha Niraj Kumar, Jha Saurabh Kumar, Rathi Brijesh, Kumar Dhruv
Amity Institute of Molecular Medicine and Stem Cell Research (AIMMSCR), Amity University Uttar Pradesh, Sec-125, Noida, 201313 India.
Laboratory for Translational Chemistry and Drug Discovery, Department of Chemistry, Hansraj College, University of Delhi, New Delhi, India.
3 Biotech. 2021 Mar;11(3):117. doi: 10.1007/s13205-021-02665-3. Epub 2021 Feb 7.
Head and neck squamous cell carcinoma (HNSCC) is the six most common cancer globally and most common cancer in men in India. The metabolic regulation is highly altered and is considered as a hall mark of HNSCC. TP53-induced glycolysis and apoptosis regulator (TIGAR) plays very important role in the development and progression of HNSCC. The aim of our study is to identify a novel FDA approved anticancer inhibitor against mutated TP53-induced glycolysis and apoptosis regulator (TIGAR) through drug repurposing approach. A library of 105 FDA approved anticancer compounds were screened using molecular docking approach against TIGAR (PDB: 3DCY) both Wild-Type (WT) and mutated (Mut). Specific mutations in TIGAR were identified using cBioPortal, a cancer genomics database and mutated structure was modelled using SWISS-MODEL. Out of 510 sequenced cases/patients samples, 17(3%) patients showed alteration in TIGAR [TIGAR and TIGAR]. The virtual drug screening showed 45 drugs out of 105 high binding affinity with TIGAR, Trabectedin showed highest binding affinity with both TIGAR (- 13.3 kcal/mol) as well as TIGAR (- 13.8 kcal/mol). The molecular docking studies were validated using molecular dynamics simulation (MD Simulation) of protein-ligand complex of TIGAR and Trabectedin for 100 ns. The MD Simulation of Trabectedin complex showed more stable with TIGAR compared to TIGAR. Moreover, the string analysis revealed that metabolic-related genes, HK2, PFKFB1, PFKM, PFKP, PFKL, FBP1 are closely associated with TIGAR in HNSCC. Our findings suggest that Trabectedin can be proposed as an inhibitor for [TIGAR] which can be used to target metabolic signalings in HNSCC. However, further investigation and in vitro and in vivo validation our findings required to understand the molecular mechanisms of regulation of Trabectedin in HNSCC.
头颈部鳞状细胞癌(HNSCC)是全球第六大常见癌症,也是印度男性中最常见的癌症。其代谢调节发生高度改变,被视为HNSCC的一个标志。TP53诱导的糖酵解和凋亡调节因子(TIGAR)在HNSCC的发生和发展中起着非常重要的作用。我们研究的目的是通过药物再利用方法,确定一种新的经美国食品药品监督管理局(FDA)批准的针对突变型TP53诱导的糖酵解和凋亡调节因子(TIGAR)的抗癌抑制剂。使用分子对接方法,针对野生型(WT)和突变型(Mut)的TIGAR(蛋白质数据银行:3DCY),对105种经FDA批准的抗癌化合物库进行了筛选。利用癌症基因组数据库cBioPortal确定TIGAR中的特定突变,并使用SWISS-MODEL对突变结构进行建模。在510例测序病例/患者样本中,17例(3%)患者的TIGAR出现改变[TIGAR和TIGAR]。虚拟药物筛选显示,105种药物中有45种与TIGAR具有高结合亲和力,曲贝替定与TIGAR(-13.3千卡/摩尔)以及TIGAR(-13.8千卡/摩尔)均显示出最高的结合亲和力。通过对TIGAR和曲贝替定的蛋白质-配体复合物进行100纳秒的分子动力学模拟(MD模拟),对分子对接研究进行了验证。与TIGAR相比,曲贝替定复合物的MD模拟显示与TIGAR更稳定。此外,STRING分析表明,代谢相关基因HK2、PFKFB1、PFKM、PFKP、PFKL、FBP1在HNSCC中与TIGAR密切相关。我们的研究结果表明,曲贝替定可被提议作为[TIGAR]的抑制剂,可用于靶向HNSCC中的代谢信号传导。然而,需要进一步的研究以及体外和体内验证我们的研究结果,以了解曲贝替定在HNSCC中的调节分子机制。