内生菌属sp. SUK 48的DNA测序分析数据。
Data on DNA-seq analysis of Endophytic sp. SUK 48.
作者信息
Ahmad Siti Junaidah, Zin Noraziah Mohamad
机构信息
Center for Diagnostic, Therapeutic and Investigative Studies, Faculty of Health Sciences, Universiti Kebangsaan Malaysia, Jalan Raja Muda Abd Aziz, 50300 Kuala Lumpur, Malaysia.
Faculty of Health Sciences, Universiti Sultan Zainal Abidin, 21300, Kuala Nerus, Terengganu, Malaysia.
出版信息
Data Brief. 2021 Jan 20;35:106768. doi: 10.1016/j.dib.2021.106768. eCollection 2021 Apr.
The data genome sequence of SUK 48 consists of 8,341,706 bp, comprising of one contig with a high G + C content of 72.33%. The genome sequence encodes for 67 tRNAs and 21 rRNAs in one contig. SUK48 was found to have low similarities with other sp. (81-93% ANI indices) indicating that the isolated strain has a unique genome property and is presumably a novel species. This genome includes 34 genetic clusters responsible for the synthesis of secondary metabolites, including two polyketide synthase (PKS) clusters; one PKS type II cluster gene, one PKS gene cluster type III, five NRPS genetic clusters, and five PKS/NRPS hybrid clusters.
SUK 48的数据基因组序列由8341706个碱基对组成，包含一个高G+C含量为72.33%的重叠群。该基因组序列在一个重叠群中编码67个tRNA和21个rRNA。发现SUK48与其他物种的相似性较低（ANI指数为81-93%），这表明分离出的菌株具有独特的基因组特性，可能是一个新物种。该基因组包括34个负责次生代谢物合成的基因簇，其中包括两个聚酮合酶（PKS）基因簇；一个II型PKS基因簇、一个III型PKS基因簇、五个非核糖体肽合成酶（NRPS）基因簇和五个PKS/NRPS杂交基因簇。
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