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长链非编码 RNA CDKN2B-AS1 被 IGF2BP3 稳定,通过表观遗传激活 NUF2 转录驱动肾透明细胞癌的恶性转化。

LncRNA CDKN2B-AS1 stabilized by IGF2BP3 drives the malignancy of renal clear cell carcinoma through epigenetically activating NUF2 transcription.

机构信息

Guangdong Key Laboratory of Systems Biology and Synthetic Biology for Urogenital Tumors, Shenzhen Second People's Hospital, First Affiliated Hospital of Shenzhen University, 518000, Shenzhen, Guangdong, China.

Department of Minimally Invasive Intervention, Peking University Shenzhen Hospital, 518000, Shenzhen, Guangdong, China.

出版信息

Cell Death Dis. 2021 Feb 19;12(2):201. doi: 10.1038/s41419-021-03489-y.

DOI:10.1038/s41419-021-03489-y
PMID:33608495
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7895987/
Abstract

Because of the lack of sensitivity to radiotherapy and chemotherapy, therapeutic options for renal clear cell carcinoma (KIRC) are scarce. Long noncoding RNAs (lncRNAs) play crucial roles in the progression of cancer. However, their functional roles and upstream mechanisms in KIRC remain largely unknown. Exploring the functions of potential essential lncRNAs may lead to the discovery of novel targets for the diagnosis and treatment of KIRC. Here, according to the integrated analysis of RNA sequencing and survival data in TCGA-KIRC datasets, cyclin-dependent kinase inhibitor 2B antisense lncRNA (CDKN2B-AS1) was discovered to be the most upregulated among the 14 lncRNAs that were significantly overexpressed in KIRC and related to shorter survival. Functionally, CDKN2B-AS1 depletion suppressed cell proliferation, migration, and invasion both in vitro and in vivo. Mechanistically, CDKN2B-AS1 exerted its oncogenic activity by recruiting the CREB-binding protein and SET and MYND domain-containing 3 epigenetic-modifying complex to the promoter region of Ndc80 kinetochore complex component (NUF2), where it epigenetically activated NUF2 transcription by augmenting local H3K27ac and H3K4me3 modifications. Moreover, we also showed that CDKN2B-AS1 interacted with and was stabilized by insulin-like growth factor 2 mRNA-binding protein 3 (IGF2BP3), an oncofetal protein showing increased levels in KIRC. The Kaplan-Meier method and receiver operating curve analysis revealed that patients whose IGF2BP3, CDKN2B-AS1 and NUF2 are all elevated showed the shortest survival time, and the combined panel (containing IGF2BP3, CDKN2B-AS1, and NUF2) possessed the highest accuracy in discriminating high-risk from low-risk KIRC patients. Thus, we conclude that the stabilization of CDKN2B-AS1 by IGF2BP3 drives the malignancy of KIRC through epigenetically activating NUF2 transcription and that the IGF2BP3/CDKN2B-AS1/NUF2 axis may be an ideal prognostic and diagnostic biomarker and therapeutic target for KIRC.

摘要

由于对放疗和化疗的敏感性不足,肾透明细胞癌(KIRC)的治疗选择有限。长链非编码 RNA(lncRNA)在癌症的进展中起着至关重要的作用。然而,它们在 KIRC 中的功能作用和上游机制在很大程度上仍然未知。探索潜在的必需 lncRNA 的功能可能会发现 KIRC 诊断和治疗的新靶点。在这里,根据 TCGA-KIRC 数据集的 RNA 测序和生存数据的综合分析,发现细胞周期蛋白依赖性激酶抑制剂 2B 反义 lncRNA(CDKN2B-AS1)是在 KIRC 中表达显著上调且与生存时间较短相关的 14 个 lncRNA 中上调最明显的。功能上,CDKN2B-AS1 缺失抑制了体外和体内的细胞增殖、迁移和侵袭。在机制上,CDKN2B-AS1 通过募集 CREB 结合蛋白和 SET 和 MYND 结构域包含 3 个表观遗传修饰复合物到 Ndc80 着丝粒复合物成分(NUF2)的启动子区域,通过增加局部 H3K27ac 和 H3K4me3 修饰来表观激活 NUF2 转录,从而发挥其致癌活性。此外,我们还表明,CDKN2B-AS1 与胰岛素样生长因子 2 mRNA 结合蛋白 3(IGF2BP3)相互作用并稳定 IGF2BP3,IGF2BP3 是一种癌胚蛋白,在 KIRC 中水平升高。Kaplan-Meier 方法和接收者操作曲线分析显示,IGF2BP3、CDKN2B-AS1 和 NUF2 均升高的患者的生存时间最短,而包含 IGF2BP3、CDKN2B-AS1 和 NUF2 的联合组在区分高危和低危 KIRC 患者方面具有最高的准确性。因此,我们得出结论,IGF2BP3 稳定 CDKN2B-AS1 通过表观激活 NUF2 转录驱动 KIRC 的恶性程度,IGF2BP3/CDKN2B-AS1/NUF2 轴可能是 KIRC 的理想预后和诊断生物标志物和治疗靶点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d913/7895987/75d495c29269/41419_2021_3489_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d913/7895987/d822dbf6da06/41419_2021_3489_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d913/7895987/a871d4b709b0/41419_2021_3489_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d913/7895987/70c808ea0b22/41419_2021_3489_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d913/7895987/d9999f673fb1/41419_2021_3489_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d913/7895987/437e63bb400f/41419_2021_3489_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d913/7895987/75d495c29269/41419_2021_3489_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d913/7895987/d822dbf6da06/41419_2021_3489_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d913/7895987/a871d4b709b0/41419_2021_3489_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d913/7895987/70c808ea0b22/41419_2021_3489_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d913/7895987/d9999f673fb1/41419_2021_3489_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d913/7895987/437e63bb400f/41419_2021_3489_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d913/7895987/75d495c29269/41419_2021_3489_Fig6_HTML.jpg

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