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Development of a Novel KCNN4-Related ceRNA Network and Prognostic Model for Renal Clear Cell Carcinoma.

作者信息

Bu Hengtao, Song Qiang, Zhang Jiexiu, Wei Yuang, Liu Bianjiang

机构信息

Department of Urology, The First Affiliated Hospital of Nanjing Medical University, Nanjing 210029, China.

出版信息

Anal Cell Pathol (Amst). 2023 Jan 24;2023:2533992. doi: 10.1155/2023/2533992. eCollection 2023.


DOI:10.1155/2023/2533992
PMID:39282155
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11401688/
Abstract

BACKGROUND: Clear cell renal cell carcinoma (ccRCC) accounts for more than 80% of renal cell carcinomas. Yet, it has not been fully understood about the derivation and progression of the tumor, as well as the long-term benefits from multimodality therapy. Therefore, reliable and applicable molecular markers are urgently needed for the prediction of diagnosis and prognosis of ccRCC patients. METHODS: Genetic and clinical information of 533 ccRCC patients from The Cancer Genome Atlas database was collected for comprehensive bioinformatic analyses. UALCAN was used to detect gene expression in paired tumor samples. Two data sets from Gene Expression Omnibus database were analyzed to identify differentially expressed genes (DEGs), and Gene Set Enrichment Analysis was applied for the functional enrichment of DEGs. Tumor Immune Single Cell Hub and Tumor IMmune Estimation Resource databases were separately used for analyses of single-immune cell and immune cell infiltration. Encyclopedia of RNA Interactomes database was explored to predict targeted microRNAs (miRNAs) and corresponding long non-coding RNAs (lncRNAs). Cox regression analysis was performed for the construction of risk signature and prognosis model. Finally, quantitative real-time polymerase chain reaction and western blot were conducted for KCNN4 expression detection in cell lines and clinical samples. Small interfering RNA was employed to knock down KCNN4, and corresponding functional experiments were conducted on ccRCC cells as well. RESULTS: KCNN4 showed elevated expression in tumors and prominent clinical correlation in ccRCC. In total, 41 KCNN4-related genes were enriched, and Gene Ontology and Kyoto Encyclopedia of Genes and Genomes analyses showed they were intimately related to immune-related signaling pathways. Spearman's analysis revealed the significantly positive correlation of KCNN4 with immune cell infiltration. By integrating hub miRNA-let-7e-5p and four critical lncRNA, a competitive endogenous RNA network-based risk signature was constructed. The prognosis model derived from it showed considerable predictive value for survival of ccRCC patients. Finally, in vitro experiments confirmed the remarkable tumor-promoting role of KCNN4 in ccRCC cells. CONCLUSION: KCNN4 significantly affected the immune status of tumor microenvironment and immunotherapy elements, through which it promoted tumor progression in ccRCC, and it could be a potential biomarker for prognosis and immunotherapy effects of ccRCC patients.

摘要
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/589f/11401688/f11518a87c56/ACP2023-2533992.009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/589f/11401688/0370c43c7ac0/ACP2023-2533992.001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/589f/11401688/186f01e16bdf/ACP2023-2533992.002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/589f/11401688/cbdf64bb2f55/ACP2023-2533992.003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/589f/11401688/3d04672403ae/ACP2023-2533992.004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/589f/11401688/e239d61597e2/ACP2023-2533992.005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/589f/11401688/1948cc49595e/ACP2023-2533992.006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/589f/11401688/3eb1da934139/ACP2023-2533992.007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/589f/11401688/6ad8a26c47bb/ACP2023-2533992.008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/589f/11401688/f11518a87c56/ACP2023-2533992.009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/589f/11401688/0370c43c7ac0/ACP2023-2533992.001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/589f/11401688/186f01e16bdf/ACP2023-2533992.002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/589f/11401688/cbdf64bb2f55/ACP2023-2533992.003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/589f/11401688/3d04672403ae/ACP2023-2533992.004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/589f/11401688/e239d61597e2/ACP2023-2533992.005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/589f/11401688/1948cc49595e/ACP2023-2533992.006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/589f/11401688/3eb1da934139/ACP2023-2533992.007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/589f/11401688/6ad8a26c47bb/ACP2023-2533992.008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/589f/11401688/f11518a87c56/ACP2023-2533992.009.jpg

相似文献

[1]
Development of a Novel KCNN4-Related ceRNA Network and Prognostic Model for Renal Clear Cell Carcinoma.

Anal Cell Pathol (Amst). 2023-1-24

[2]
Functional enrichment analysis of LYSET and identification of related hub gene signatures as novel biomarkers to predict prognosis and immune infiltration status of clear cell renal cell carcinoma.

J Cancer Res Clin Oncol. 2023-12

[3]
KCNN4 may weaken anti-tumor immune response via raising Tregs and diminishing resting mast cells in clear cell renal cell carcinoma.

Cancer Cell Int. 2022-6-10

[4]
Construction of Competitive Endogenous RNA Network and Verification of 3-Key LncRNA Signature Associated With Distant Metastasis and Poor Prognosis in Patients With Clear Cell Renal Cell Carcinoma.

Front Oncol. 2021-3-24

[5]
Identification of Novel Prognostic Signatures for Clear Cell Renal Cell Carcinoma Based on ceRNA Network Construction and Immune Infiltration Analysis.

Dis Markers. 2022

[6]
KCNN4 is a potential prognostic marker and critical factor affecting the immune status of the tumor microenvironment in kidney renal clear cell carcinoma.

Transl Androl Urol. 2021-6

[7]
Integrated analysis of a competing endogenous RNA network reveals a ferroptosis-related 6-lncRNA prognostic signature in clear cell renal cell carcinoma.

Adv Clin Exp Med. 2024-12

[8]
Comprehensive analysis of necroptosis-related lncRNA signature with potential implications in tumor heterogeneity and prediction of prognosis in clear cell renal cell carcinoma.

Eur J Med Res. 2023-7-14

[9]
Analysis of Ferroptosis-Related LncRNAs Signatures Associated with Tumor Immune Infiltration and Experimental Validation in Clear Cell Renal Cell Carcinoma.

Int J Gen Med. 2022-3-19

[10]
Immune regulation and prognosis indicating ability of a newly constructed multi-genes containing signature in clear cell renal cell carcinoma.

BMC Cancer. 2023-7-12

本文引用的文献

[1]
Identification of MX2 as a Novel Prognostic Biomarker for Sunitinib Resistance in Clear Cell Renal Cell Carcinoma.

Front Genet. 2021-7-9

[2]
KCNN4 is a potential prognostic marker and critical factor affecting the immune status of the tumor microenvironment in kidney renal clear cell carcinoma.

Transl Androl Urol. 2021-6

[3]
KCNN4-mediated Ca/MET/AKT axis is promising for targeted therapy of pancreatic ductal adenocarcinoma.

Acta Pharmacol Sin. 2022-3

[4]
KCNN4 promotes the progression of lung adenocarcinoma by activating the AKT and ERK signaling pathways.

Cancer Biomark. 2021

[5]
Sunitinib treatment promotes metastasis of drug-resistant renal cell carcinoma via TFE3 signaling pathway.

Cell Death Dis. 2021-2-26

[6]
LncRNA CDKN2B-AS1 stabilized by IGF2BP3 drives the malignancy of renal clear cell carcinoma through epigenetically activating NUF2 transcription.

Cell Death Dis. 2021-2-19

[7]
A molecular cell atlas of the human lung from single-cell RNA sequencing.

Nature. 2020-11

[8]
KCNN4 induces multiple chemoresistance in breast cancer by regulating BCL2A1.

Am J Cancer Res. 2020-10-1

[9]
is a diagnostic and prognostic biomarker that promotes papillary thyroid cancer progression.

Aging (Albany NY). 2020-8-28

[10]
Whole-genome sequencing of a sporadic primary immunodeficiency cohort.

Nature. 2020-5-6

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