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(兰科)的完整叶绿体基因组。

The complete chloroplast genome of (Orchidaceae).

作者信息

Du Zhihui, Yang Xiyu, Tan Guofei, Chen Zhilin

机构信息

Guizhou Horticulture Institute, Guizhou Academy of Agricultural Sciences, Guiyang, China.

出版信息

Mitochondrial DNA B Resour. 2021 Jun 7;6(7):1897-1898. doi: 10.1080/23802359.2021.1934173.

Abstract

, a wild orchid species in the Orchid family (Orchidaceae), is considered highly valuable because of its long flowering period and beautiful plant shape. We sequenced the complete chloroplast genome of using the Illumina Hiseq platform (Illumina, San Diego, CA). The size of the chloroplast genome is 155,408 bp, with an average GC content of 36.76%. This chloroplast genome has containing a large single-copy (LSC) region of 84,189 bp, a small single-copy (SSC) region of 17,991 bp, and two inverted (IRa and IRb) repeat regions of two 26,614 bp. A total of 118 unique genes were annotated, including 76 protein-coding genes, 38 tRNA genes, and 4 rRNA genes. A maximum-likelihood phylogenetic tree indicated that is closely related to in the genus based on 9 whole chloroplast genome sequences.

摘要

[该兰花科野生兰花物种]因其花期长和植株形态优美而被认为具有很高的价值。我们使用Illumina Hiseq平台(Illumina,加利福尼亚州圣地亚哥)对[该兰花物种]的完整叶绿体基因组进行了测序。[该兰花物种]叶绿体基因组大小为155,408 bp,平均GC含量为36.76%。该叶绿体基因组包含一个84,189 bp的大单拷贝(LSC)区域、一个17,991 bp的小单拷贝(SSC)区域以及两个26,614 bp的反向(IRa和IRb)重复区域。总共注释了118个独特基因,包括76个蛋白质编码基因、38个tRNA基因和4个rRNA基因。基于9个完整叶绿体基因组序列构建的最大似然系统发育树表明,[该兰花物种]与[同属的另一兰花物种]密切相关。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d3e9/8189086/0b7e06959092/TMDN_A_1934173_F0001_B.jpg

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