Chudejova Katerina, Kraftova Lucie, Mattioni Marchetti Vittoria, Hrabak Jaroslav, Papagiannitsis Costas C, Bitar Ibrahim
Department of Microbiology, Faculty of Medicine, University Hospital in Pilsen, Charles University, Pilsen, Czechia.
Biomedical Center, Faculty of Medicine, Charles University, Pilsen, Czechia.
Front Microbiol. 2021 Feb 9;12:641415. doi: 10.3389/fmicb.2021.641415. eCollection 2021.
The aim of this study was to characterize four co-producing NDM- and OXA-48-like carbapenemases from Czech patients with travel history or/and previous hospitalization abroad. isolates belonged to "high risk" clones ST147, ST11, and ST15, while the isolate was assigned to ST167. All isolates expressed resistance against most β-lactams, including carbapenems, while retaining susceptibility to colistin. Furthermore, analysis of WGS data showed that all four isolates co-produced OXA-48- and NDM-type carbapenemases, in different combinations (Kpn47733: + ; Kpn50595: + ; Kpn51015: + ; Eco52418: + ). In Kpn51015, the was found on plasmid p51015_OXA-244, while the respective gene was localized in the chromosomal contig of Eco52418. On the other hand, was identified on a ColKP3 plasmid in isolate Kpn47733, while a -carrying plasmid being an IncX3-ColKP3 fusion was identified in Kpn50595. The gene was found on two different plasmids, p51015_NDM-1 belonging to a novel IncH plasmid group and p51015_NDM-1 being an IncF -FIB replicon. Furthermore, the was found in two IncFII plasmids exhibiting limited nucleotide similarity to each other. In both plasmids, the genetic environment of was identical. Finally, in all four carbapenemase-producing isolates, a diverse number of additional replicons, some of these associated with important resistance determinants, like , and , were identified. In conclusion, this study reports the first description of OXA-244-producing isolated from Czech hospitals. Additionally, our findings indicated the genetic plurality involved in the acquisition and dissemination of determinants encoding OXA/NDM carbapenemases.
本研究的目的是对来自有旅行史或/和曾在国外住院的捷克患者的四种同时产生NDM和OXA - 48样碳青霉烯酶的菌株进行特征分析。分离株属于“高风险”克隆ST147、ST11和ST15,而另一分离株被归为ST167。所有分离株对包括碳青霉烯类在内的大多数β - 内酰胺类药物均表现出耐药性,而对黏菌素仍敏感。此外,全基因组测序(WGS)数据分析表明,所有四个分离株均以不同组合同时产生OXA - 48和NDM型碳青霉烯酶(Kpn47733: + ;Kpn50595: + ;Kpn51015: + ;Eco52418: + )。在Kpn51015中, 位于质粒p51015_OXA - 244上,而相应基因位于Eco52418的染色体重叠群中。另一方面,在分离株Kpn47733的ColKP3质粒上鉴定到 ,而在Kpn50595中鉴定到一个携带 的质粒是IncX3 - ColKP3融合质粒。 基因存在于两个不同的质粒上,p51015_NDM - 1属于一个新的IncH质粒组,p51015_NDM - 1是一个IncF - FIB复制子。此外, 在两个IncFII质粒中被发现,它们彼此之间核苷酸相似性有限。在这两个质粒中, 的遗传环境是相同的。最后,在所有四个产碳青霉烯酶的分离株中,鉴定出了多种额外的复制子,其中一些与重要的耐药决定因素相关,如 、 和 。总之,本研究首次报道了从捷克医院分离出的产OXA - 244的 。此外,我们的研究结果表明,在编码OXA/NDM碳青霉烯酶的决定因素的获得和传播过程中涉及遗传多样性。