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通过自底向上的粗粒化构建流体的多体耗散粒子动力学模型。

Constructing many-body dissipative particle dynamics models of fluids from bottom-up coarse-graining.

作者信息

Han Yining, Jin Jaehyeok, Voth Gregory A

机构信息

Department of Chemistry, Chicago Center for Theoretical Chemistry, James Franck Institute, and Institute for Biophysical Dynamics, The University of Chicago, Chicago, Illinois 60637, USA.

出版信息

J Chem Phys. 2021 Feb 28;154(8):084122. doi: 10.1063/5.0035184.

Abstract

Since their emergence in the 1990s, mesoscopic models of fluids have been widely used to study complex organization and transport phenomena beyond the molecular scale. Even though these models are designed based on results from physics at the meso- and macroscale, such as fluid mechanics and statistical field theory, the underlying microscopic foundation of these models is not as well defined. This paper aims to build such a systematic connection using bottom-up coarse-graining methods. From the recently developed dynamic coarse-graining scheme, we introduce a statistical inference framework of explicit many-body conservative interaction that quantitatively recapitulates the mesoscopic structure of the underlying fluid. To further consider the dissipative and fluctuation forces, we design a novel algorithm that parameterizes these forces. By utilizing this algorithm, we derive pairwise decomposable friction kernels under both non-Markovian and Markovian limits where both short- and long-time features of the coarse-grained dynamics are reproduced. Finally, through these new developments, the many-body dissipative particle dynamics type of equations of motion are successfully derived. The methodologies developed in this work thus open a new avenue for the construction of direct bottom-up mesoscopic models that naturally bridge the meso- and macroscopic physics.

摘要

自20世纪90年代出现以来,流体的介观模型已被广泛用于研究分子尺度以上的复杂组织和输运现象。尽管这些模型是基于介观和宏观尺度的物理结果设计的,如流体力学和统计场论,但这些模型的潜在微观基础并不十分明确。本文旨在使用自下而上的粗粒化方法建立这样一种系统的联系。从最近发展的动态粗粒化方案出发,我们引入了一个显式多体保守相互作用的统计推断框架,该框架定量地概括了底层流体的介观结构。为了进一步考虑耗散力和涨落力,我们设计了一种对这些力进行参数化的新算法。利用该算法,我们在非马尔可夫极限和马尔可夫极限下导出了成对可分解的摩擦核,其中粗粒化动力学的短时和长时特征都得到了再现。最后,通过这些新进展,成功地导出了多体耗散粒子动力学类型的运动方程。因此,本文所开发的方法为构建直接的自下而上的介观模型开辟了一条新途径,该模型自然地连接了介观和宏观物理。

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