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重温《黑客帝国》:肽聚糖在真细菌界的开幕之夜

The Matrix Revisited: Opening Night for the Pel Polysaccharide Across Eubacterial Kingdoms.

作者信息

Whitfield Gregory B, Howell P Lynne

机构信息

Program in Molecular Medicine, The Hospital for Sick Children, Toronto, ON, Canada.

Department of Biochemistry, University of Toronto, ON, Canada.

出版信息

Microbiol Insights. 2021 Feb 15;14:1178636120988588. doi: 10.1177/1178636120988588. eCollection 2021.

Abstract

Bacteria synthesize and export adhesive macromolecules to enable biofilm formation. These macromolecules, collectively called the biofilm matrix, are structurally varied and often unique to specific bacterial species or subspecies. This heterogeneity in matrix utilization makes it difficult to facilitate direct comparison between biofilm formation mechanisms of different bacterial species. Despite this, some matrix components, in particular the polysaccharides poly-β-1,6--acetyl-glucosamine (PNAG) and bacterial cellulose, are utilized by many Gram-negative species for biofilm formation. However, there is a very narrow distribution of these components across Gram-positive organisms, whose biofilm matrix determinants remain largely undiscovered. We found that a genetic locus required for the production of a biofilm matrix component of , the Pel polysaccharide, is widespread in Gram-negative bacteria and that there is a variant form of this cluster present in many Gram-positive bacterial species. We demonstrated that this locus is required for biofilm formation by ATCC 10987, produces a polysaccharide that is similar to Pel, and is post-translationally regulated by cyclic-3',5'-dimeric-guanosine monophosphate (c-di-GMP) in a manner identical to . However, while the proposed mechanism for Pel production appears remarkably similar between and , we identified several key differences between Gram-negative and Gram-positive Pel biosynthetic components in other monoderms. In particular, 4 different architectural subtypes of the c-di-GMP-binding component PelD were identified, including 1 found only in Streptococci that has entirely lost the c-di-GMP recognition domain. These observations highlight how existing multi-component bacterial machines can be subtly tweaked to adapt to the unique physiology and regulatory mechanisms of Gram-positive organisms. Collectively, our analyses suggest that the Pel biosynthetic locus is one of the most phylogenetically widespread biofilm matrix determinants in bacteria, and that its mechanism of production and regulation is extraordinarily conserved across the majority of organisms that possess it.

摘要

细菌合成并分泌黏附性大分子以形成生物膜。这些大分子统称为生物膜基质,其结构多样,通常是特定细菌物种或亚种所特有的。基质利用的这种异质性使得难以直接比较不同细菌物种的生物膜形成机制。尽管如此,一些基质成分,特别是多糖聚-β-1,6-N-乙酰葡糖胺(PNAG)和细菌纤维素,被许多革兰氏阴性菌用于生物膜形成。然而,这些成分在革兰氏阳性菌中的分布非常有限,其生物膜基质决定因素在很大程度上仍未被发现。我们发现,Pel多糖(一种生物膜基质成分)产生所需的一个基因座在革兰氏阴性菌中广泛存在,并且在许多革兰氏阳性菌物种中存在该基因簇的一种变体形式。我们证明,该基因座是粪肠球菌ATCC 10987生物膜形成所必需的,它产生一种与Pel相似的多糖,并且由环二鸟苷单磷酸(c-di-GMP)进行翻译后调控,其方式与铜绿假单胞菌相同。然而,虽然在粪肠球菌和铜绿假单胞菌之间,Pel产生的推测机制看起来非常相似,但我们在其他单膜菌中发现了革兰氏阴性和革兰氏阳性Pel生物合成成分之间的几个关键差异。特别是,我们鉴定出了c-di-GMP结合成分PelD的4种不同结构亚型,其中1种仅在链球菌中发现,它完全失去了c-di-GMP识别结构域。这些观察结果突出了现有的多组分细菌机制是如何被巧妙调整以适应革兰氏阳性菌独特的生理学和调控机制的。总体而言,我们的分析表明,Pel生物合成基因座是细菌中系统发育分布最广泛的生物膜基质决定因素之一,并且其产生和调控机制在大多数拥有它的生物体中极其保守。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e0ea/7890745/ef1745e8e1c1/10.1177_1178636120988588-fig1.jpg

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