Program in Molecular Medicine, The Hospital for Sick Children, Toronto, Ontario, Canada; Department of Biochemistry, University of Toronto, Toronto, Ontario, Canada.
Program in Molecular Medicine, The Hospital for Sick Children, Toronto, Ontario, Canada.
J Biol Chem. 2020 Aug 21;295(34):11949-11962. doi: 10.1074/jbc.RA120.014555. Epub 2020 Jun 29.
Pel is a GalNAc-rich bacterial polysaccharide that contributes to the structure and function of biofilms. The operon is highly conserved among diverse bacterial species, and Pel may therefore be a widespread biofilm determinant. Previous annotation of gene clusters has helped us identify an additional gene, , that is present adjacent to in >100 different bacterial species. The gene is predicted to encode a member of the short-chain dehydrogenase/reductase (SDR) superfamily, but its potential role in Pel-dependent biofilm formation is unknown. Herein, we have used Pf-5 as a model to elucidate PelX function as lacks a homologue in its gene cluster. We found that forms Pel-dependent biofilms; however, despite expression of under these conditions, biofilm formation was unaffected in a Δ strain. This observation led us to identify a paralogue, PFL_5533, which we designate here PgnE, that appears to be functionally redundant to In line with this, a Δ Δ double mutant was substantially impaired in its ability to form Pel-dependent biofilms. To understand the molecular basis for this observation, we determined the structure of PelX to 2.1 Å resolution. The structure revealed that PelX resembles UDP-GlcNAc C4-epimerases. Using H NMR analysis, we show that PelX catalyzes the epimerization between UDP-GlcNAc and UDP-GalNAc. Our results indicate that Pel-dependent biofilm formation requires a UDP-GlcNAc C4-epimerase that generates the UDP-GalNAc precursors required by the Pel synthase machinery for polymer production.
Pel 是一种富含 GalNAc 的细菌多糖,有助于生物膜的结构和功能。该操纵子在不同的细菌物种中高度保守,因此 Pel 可能是一种广泛存在的生物膜决定因素。先前对基因簇的注释帮助我们鉴定了另一个基因,,它存在于 100 多种不同的细菌物种中。该基因预测编码短链脱氢酶/还原酶 (SDR) 超家族的成员,但它在 Pel 依赖的生物膜形成中的潜在作用尚不清楚。在此,我们使用 Pf-5 作为模型来阐明 PelX 的功能,因为它在其基因簇中缺乏 同源物。我们发现 形成 Pel 依赖的生物膜;然而,尽管在这些条件下表达了 ,但在Δ菌株中生物膜形成不受影响。这一观察结果促使我们鉴定出一个 基因的 旁系同源物,PFL_5533,我们将其命名为 PgnE,它似乎在功能上与 冗余。与此一致,ΔΔ双突变体在形成 Pel 依赖的生物膜的能力上受到严重损害。为了理解这一观察结果的分子基础,我们将 PelX 的结构确定到 2.1 Å 的分辨率。该结构表明 PelX 类似于 UDP-GlcNAc C4-差向异构酶。使用 H NMR 分析,我们表明 PelX 催化 UDP-GlcNAc 和 UDP-GalNAc 之间的差向异构化。我们的结果表明,Pel 依赖的生物膜形成需要一种 UDP-GlcNAc C4-差向异构酶,该酶生成 Pel 合酶机制用于聚合物生产所需的 UDP-GalNAc 前体。