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枯草芽孢杆菌整合和共轭元件 ICE 中排除系统的特异性和选择性优势。

Specificity and Selective Advantage of an Exclusion System in the Integrative and Conjugative Element ICE of Bacillus subtilis.

机构信息

Department of Biology, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA.

Department of Biology, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA

出版信息

J Bacteriol. 2021 Apr 21;203(10). doi: 10.1128/JB.00700-20.

Abstract

Integrative and conjugative elements (ICEs) are mobile genetic elements capable of transferring their own and other DNA. They contribute to the spread of antibiotic resistance and other important traits for bacterial evolution. Exclusion is a mechanism used by many conjugative plasmids and a few ICEs to prevent their host cell from acquiring a second copy of the cognate element. ICE of has an exclusion mechanism whereby the exclusion protein YddJ in a potential recipient inhibits the activity of the ICEencoded conjugation machinery in a potential donor. The target of YddJ-mediated exclusion is the conjugation protein ConG (a VirB6 homolog). Here, we defined the regions of YddJ and ConG that confer exclusion specificity and determined the importance of exclusion to host cells. Using chimeras that had parts of ConG from ICE and the closely related ICE, we identified a putative extracellular loop of ConG that conferred specificity for exclusion by the cognate YddJ. Using chimeras of YddJ from ICE and ICE, we identified two regions in YddJ needed for exclusion specificity. We also found that YddJ-mediated exclusion reduced the death of donor cells following conjugation into recipients. Donor death was dependent on the ability of transconjugants to themselves become donors and was reduced under osmoprotective conditions, indicating that death was likely due to alterations in the donor cell envelope caused by excessive conjugation. We postulate that elements that can have high frequencies of transfer likely evolved exclusion mechanisms to protect the host cells from excessive death. Horizontal gene transfer is a driving force in bacterial evolution, responsible for the spread of many traits, including antibiotic and heavy metal resistance. Conjugation, one type of horizontal gene transfer, involves DNA transfer from donor to recipient cells through conjugation machinery and direct cell-cell contact. Exclusion mechanisms allow conjugative elements to prevent their host from acquiring additional copies of the element and are highly specific, enabling hosts to acquire heterologous elements. We defined regions of the exclusion protein and its target in the conjugation machinery that convey high specificity of exclusion. We found that exclusion protects donors from cell death during periods of high transfer. This is likely important for the element to enter new populations of cells.

摘要

整合子-接合元件(ICEs)是能够转移自身和其他 DNA 的可移动遗传元件。它们有助于抗生素耐药性和其他细菌进化的重要特征的传播。排除是许多接合质粒和一些 ICE 用来防止其宿主细胞获得同源元件的第二个拷贝的机制。 的 ICE 具有排除机制,其中潜在受体中的排除蛋白 YddJ 抑制潜在供体中 ICE 编码的接合机制的活性。YddJ 介导的排除的靶标是接合蛋白 ConG(VirB6 同源物)。在这里,我们定义了赋予排除特异性的 YddJ 和 ConG 的区域,并确定了排除对宿主细胞的重要性。使用来自 ICE 和密切相关的 ICE 的 ConG 的部分具有嵌合体,我们鉴定了 ConG 的一个假定细胞外环,赋予了同源 YddJ 的排除特异性。使用来自 ICE 和 ICE 的 YddJ 的嵌合体,我们鉴定了 YddJ 中用于排除特异性的两个区域。我们还发现 YddJ 介导的排除减少了供体细胞在接合到受体后的死亡。供体死亡依赖于转导体自身成为供体的能力,并在渗透压保护条件下降低,表明死亡可能是由于供体细胞包膜的改变所致由过度结合引起的。我们假设可以具有高转移频率的元件可能进化出排除机制来保护宿主细胞免受过度死亡。水平基因转移是细菌进化的驱动力,负责许多特征的传播,包括抗生素和重金属抗性。接合是一种水平基因转移类型,涉及通过接合机制和直接细胞-细胞接触从供体到受体细胞的 DNA 转移。排除机制允许接合元件防止其宿主获得元件的额外副本,并且高度特异性,使宿主能够获得异源元件。我们定义了排除蛋白及其在接合机制中的靶标中的区域,该区域传达了排除的高度特异性。我们发现排除可以保护供体在高转移期间免受细胞死亡。这对于元素进入新的细胞群体可能很重要。

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