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基于差异表达基因(家养动物与野生动物的基因)的人类疾病的生物信息学模型,这些基因是与生殖潜能变化相关的人类基因的同源基因。

A Bioinformatics Model of Human Diseases on the Basis of Differentially Expressed Genes (of Domestic Versus Wild Animals) That Are Orthologs of Human Genes Associated with Reproductive-Potential Changes.

机构信息

Novosibirsk State University, 630090 Novosibirsk, Russia.

Institute of Cytology and Genetics, Siberian Branch of Russian Academy of Sciences, 630090 Novosibirsk, Russia.

出版信息

Int J Mol Sci. 2021 Feb 26;22(5):2346. doi: 10.3390/ijms22052346.


DOI:10.3390/ijms22052346
PMID:33652917
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7956675/
Abstract

Earlier, after our bioinformatic analysis of single-nucleotide polymorphisms of TATA-binding protein-binding sites within gene promoters on the human Y chromosome, we suggested that human reproductive potential diminishes during self-domestication. Here, we implemented bioinformatics models of human diseases using animal in vivo genome-wide RNA-Seq data to compare the effect of co-directed changes in the expression of orthologous genes on human reproductive potential and during the divergence of domestic and wild animals from their nearest common ancestor (NCA). For example, serotonin receptor 3A () deficiency contributes to sudden death in pregnancy, consistently with underexpression in guinea pigs ( during their divergence from their NCA with cavy (). Overall, 25 and three differentially expressed genes (hereinafter, DEGs) in domestic animals versus 11 and 17 DEGs in wild animals show the direction consistent with human orthologous gene-markers of reduced and increased reproductive potential. This indicates a reliable association between DEGs in domestic animals and human orthologous genes reducing reproductive potential (Pearson's χ test < 0.001, Fisher's exact test < 0.05, binomial distribution < 0.0001), whereas DEGs in wild animals uniformly match human orthologous genes decreasing and increasing human reproductive potential ( > 0.1; binomial distribution), thus enforcing the norm (wild type).

摘要

早些时候,在我们对人类 Y 染色体基因启动子上 TATA 结合蛋白结合位点的单核苷酸多态性进行了生物信息学分析之后,我们提出人类的生殖能力在自我驯化过程中会逐渐下降。在这里,我们使用动物体内全基因组 RNA-Seq 数据实现了人类疾病的生物信息学模型,以比较直系同源基因表达的共同定向变化对人类生殖能力的影响,以及在动物从其最近的共同祖先(NCA)中家养和野生动物的分化过程中。例如,血清素受体 3A()缺乏会导致妊娠时突然死亡,这与豚鼠中的表达不足一致(在与豚鼠()分化过程中)。总体而言,25 个和 3 个在家养动物中差异表达的基因(以下简称 DEGs)与 11 个和 17 个在野生动物中差异表达的基因显示出与人类同源基因标记生殖能力降低和增加的方向一致。这表明家养动物中的 DEGs 与人类同源基因降低生殖能力之间存在可靠关联(Pearson χ 检验<0.001,Fisher 精确检验<0.05,二项分布<0.0001),而野生动物中的 DEGs 则与人类同源基因一致地降低和增加人类生殖能力(>0.1;二项分布),从而加强了规范(野生型)。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8349/7956675/1bdbf3a047d4/ijms-22-02346-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8349/7956675/1bdbf3a047d4/ijms-22-02346-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8349/7956675/1bdbf3a047d4/ijms-22-02346-g001.jpg

相似文献

[1]
A Bioinformatics Model of Human Diseases on the Basis of Differentially Expressed Genes (of Domestic Versus Wild Animals) That Are Orthologs of Human Genes Associated with Reproductive-Potential Changes.

Int J Mol Sci. 2021-2-26

[2]
A bioinformatic search for correspondence between differentially expressed genes of domestic versus wild animals and orthologous human genes altering reproductive potential.

Vavilovskii Zhurnal Genet Selektsii. 2022-2

[3]
Disruptive natural selection by male reproductive potential prevents underexpression of protein-coding genes on the human Y chromosome as a self-domestication syndrome.

BMC Genet. 2020-10-22

[4]
The behavioral endocrinology of domestication: A comparison between the domestic guinea pig (Cavia aperea f. porcellus) and its wild ancestor, the cavy (Cavia aperea).

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[5]
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[6]
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[7]
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[8]
Of domestic and wild guinea pigs: studies in sociophysiology, domestication, and social evolution.

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[9]
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[10]
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引用本文的文献

[1]
Differentially Expressed Genes and Molecular Susceptibility to Human Age-Related Diseases.

Int J Mol Sci. 2023-2-16

[2]
Plant_SNP_TATA_Z-Tester: A Web Service That Unequivocally Estimates the Impact of Proximal Promoter Mutations on Plant Gene Expression.

Int J Mol Sci. 2022-8-4

[3]
Stress Reactivity, Susceptibility to Hypertension, and Differential Expression of Genes in Hypertensive Compared to Normotensive Patients.

Int J Mol Sci. 2022-3-4

[4]
Domestication Explains Two-Thirds of Differential-Gene-Expression Variance between Domestic and Wild Animals; The Remaining One-Third Reflects Intraspecific and Interspecific Variation.

Animals (Basel). 2021-9-10

[5]
Disruptive Selection of Human Immunostimulatory and Immunosuppressive Genes Both Provokes and Prevents Rheumatoid Arthritis, Respectively, as a Self-Domestication Syndrome.

Front Genet. 2021-6-22

本文引用的文献

[1]
Autophagy-Related Protein MAP1LC3C Plays a Crucial Role in Odontogenic Differentiation of Human Dental Pulp Cells.

Tissue Eng Regen Med. 2021-4

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Jian-Pi-Yi-Shen Regulates EPO and Iron Recycling Protein Expressions in Anemic Rats with Chronic Kidney Disease: Accumulation of Hypoxia Inducible Factor-2 via ERK Signaling.

Evid Based Complement Alternat Med. 2020-10-30

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Distinct Roles of IL-1β and IL-18 in NLRC4-Induced Autoinflammation.

Front Immunol. 2020

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Disruptive natural selection by male reproductive potential prevents underexpression of protein-coding genes on the human Y chromosome as a self-domestication syndrome.

BMC Genet. 2020-10-22

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