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Bio Protoc. 2019 Oct 5;9(19):e3388. doi: 10.21769/BioProtoc.3388.
2
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本文引用的文献

1
Development of a novel cultivation technique for uncultured soil bacteria.开发一种新型的未培养土壤细菌培养技术。
Sci Rep. 2019 Apr 30;9(1):6666. doi: 10.1038/s41598-019-43182-x.
2
Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies.推出 EzBioCloud:一个统一分类学的 16S rRNA 基因序列和全基因组组装数据库。
Int J Syst Evol Microbiol. 2017 May;67(5):1613-1617. doi: 10.1099/ijsem.0.001755. Epub 2017 May 30.
3
Novel Culturing Techniques Select for Heterotrophs and Hydrocarbon Degraders in a Subantarctic Soil.新型培养技术筛选亚南极土壤中的异养生物和烃类降解菌。
Sci Rep. 2016 Nov 9;6:36724. doi: 10.1038/srep36724.
4
Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes.为了在原核生物的种系划分中实现平均核苷酸同一性和 16S rRNA 基因序列相似性之间的分类学一致性。
Int J Syst Evol Microbiol. 2014 Feb;64(Pt 2):346-351. doi: 10.1099/ijs.0.059774-0.
5
MEGA6: Molecular Evolutionary Genetics Analysis version 6.0.MEGA6:分子进化遗传学分析版本 6.0。
Mol Biol Evol. 2013 Dec;30(12):2725-9. doi: 10.1093/molbev/mst197. Epub 2013 Oct 16.
6
Pyrosequence read length of 16S rRNA gene affects phylogenetic assignment of plant-associated bacteria.16S rRNA 基因的 pyrosequence 读长会影响与植物相关的细菌的系统发育归属。
Microbes Environ. 2012;27(2):204-8. doi: 10.1264/jsme2.me11258.
7
Cultivation of unculturable soil bacteria.土壤细菌的培养。
Trends Biotechnol. 2012 Sep;30(9):475-84. doi: 10.1016/j.tibtech.2012.05.007. Epub 2012 Jul 7.
8
Growing unculturable bacteria.培养不可培养的细菌。
J Bacteriol. 2012 Aug;194(16):4151-60. doi: 10.1128/JB.00345-12. Epub 2012 Jun 1.
9
Recovery of as-yet-uncultured soil acidobacteria on dilute solid media.稀固态培养基上尚未培养的土壤酸杆菌的恢复。
Appl Environ Microbiol. 2011 Nov;77(22):8184-8. doi: 10.1128/AEM.05956-11. Epub 2011 Sep 23.
10
Effect of genetically modified poplars on soil microbial communities during the phytoremediation of waste mine tailings.基因改良杨树对废弃矿山尾矿植物修复过程中土壤微生物群落的影响。
Appl Environ Microbiol. 2011 Nov;77(21):7611-9. doi: 10.1128/AEM.06102-11. Epub 2011 Sep 2.

用于分离不可培养土壤细菌的扩散生物反应器的实验装置。

Experimental Setup for a Diffusion Bioreactor to Isolate Unculturable Soil Bacteria.

作者信息

Chaudhary Dhiraj Kumar, Kim Jaisoo

机构信息

Ecology Laboratory, Department of Life Science, Kyonggi University, Suwon, South Korea.

出版信息

Bio Protoc. 2019 Oct 5;9(19):e3388. doi: 10.21769/BioProtoc.3388.

DOI:10.21769/BioProtoc.3388
PMID:33654882
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7853981/
Abstract

Unculturable bacteria are those bacteria which proliferate in their native habitat but unable to grow or thrive in the normal laboratory media and conditions. The molecular techniques have revealed the significance of these uncultured bacteria in terms of their functional diversity and potential to produce secondary metabolites. To achieve these benefits, scientists have attempted to isolate and cultivate unculturable bacteria in the laboratory using transwell plates, optical tweezers, laser microdissection, microbioreactors, and diffusions bioreactors. However, these techniques are still inadequate to resolve the difficulties of cultivating unculturable bacteria. Therefore, it is essential to develop new cultivation method that enables growth of diverse range of bacteria in the laboratory conditions. Diffusion bioreactor is a membrane bound chamber which allows microbes to proliferate in their native environment by providing the excess to naturally occurring nutrients and signaling compounds. This paper presents efficient and reliable protocol to construct a diffusion bioreactor and its utilization to isolate and cultivate unculturable soil bacteria in laboratory.

摘要

不可培养细菌是指那些在其原生栖息地中能够增殖,但在正常实验室培养基和条件下无法生长或繁衍的细菌。分子技术已经揭示了这些未培养细菌在功能多样性和产生次生代谢产物潜力方面的重要性。为了获得这些益处,科学家们尝试在实验室中使用Transwell板、光镊、激光显微切割、微生物反应器和扩散生物反应器来分离和培养不可培养细菌。然而,这些技术仍不足以解决培养不可培养细菌的难题。因此,开发一种新的培养方法以使各种细菌能够在实验室条件下生长至关重要。扩散生物反应器是一种膜结合腔室,它通过提供过量的天然存在的营养物质和信号化合物,使微生物能够在其原生环境中增殖。本文介绍了构建扩散生物反应器的高效可靠方案及其在实验室中分离和培养不可培养土壤细菌的应用。