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核心技术专利:CN118964589B侵权必究
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Shedding light on the composition of extreme microbial dark matter: alternative approaches for culturing extremophiles.

作者信息

Schultz Júnia, Modolon Flúvio, Peixoto Raquel Silva, Rosado Alexandre Soares

机构信息

Red Sea Research Center, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia.

Computational Bioscience Research Center, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia.

出版信息

Front Microbiol. 2023 Jun 2;14:1167718. doi: 10.3389/fmicb.2023.1167718. eCollection 2023.


DOI:10.3389/fmicb.2023.1167718
PMID:37333658
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10272570/
Abstract

More than 20,000 species of prokaryotes (less than 1% of the estimated number of Earth's microbial species) have been described thus far. However, the vast majority of microbes that inhabit extreme environments remain uncultured and this group is termed "microbial dark matter." Little is known regarding the ecological functions and biotechnological potential of these underexplored extremophiles, thus representing a vast untapped and uncharacterized biological resource. Advances in microbial cultivation approaches are key for a detailed and comprehensive characterization of the roles of these microbes in shaping the environment and, ultimately, for their biotechnological exploitation, such as for extremophile-derived bioproducts (extremozymes, secondary metabolites, CRISPR Cas systems, and pigments, among others), astrobiology, and space exploration. Additional efforts to enhance culturable diversity are required due to the challenges imposed by extreme culturing and plating conditions. In this review, we summarize methods and technologies used to recover the microbial diversity of extreme environments, while discussing the advantages and disadvantages associated with each of these approaches. Additionally, this review describes alternative culturing strategies to retrieve novel taxa with their unknown genes, metabolisms, and ecological roles, with the ultimate goal of increasing the yields of more efficient bio-based products. This review thus summarizes the strategies used to unveil the hidden diversity of the microbiome of extreme environments and discusses the directions for future studies of microbial dark matter and its potential applications in biotechnology and astrobiology.

摘要
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ef23/10272570/7ecaa22fadbe/fmicb-14-1167718-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ef23/10272570/7ecaa22fadbe/fmicb-14-1167718-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ef23/10272570/7ecaa22fadbe/fmicb-14-1167718-g001.jpg

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[9]
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[10]
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本文引用的文献

[1]
Actin cytoskeleton and complex cell architecture in an Asgard archaeon.

Nature. 2023-1

[2]
Microencapsulation and incubation methodology for the cultivation of marine bacteria.

Front Microbiol. 2022-8-22

[3]
Culturomics of Bacteria from Radon-Saturated Water of the World's Oldest Radium Mine.

Microbiol Spectr. 2022-10-26

[4]
Actinospica acidithermotolerans sp. nov., a novel actinomycete isolated from sediment from an Indonesian hot spring.

Arch Microbiol. 2022-7-23

[5]
Methods and Strategies to Uncover Coral-Associated Microbial Dark Matter.

mSystems. 2022-8-30

[6]
Deep-Sea Insights into the Formation of Zero-Valent Sulfur Driven by a Bacterial Thiosulfate Oxidation Pathway.

mBio. 2022-8-30

[7]
Soil substrate culturing approaches recover diverse members of Actinomycetota from desert soils of Herring Island, East Antarctica.

Extremophiles. 2022-7-13

[8]
Metabolomic Profile of the Fungus Under Simulated Martian and Space Conditions as Support for Life-Detection Missions on Mars.

Front Microbiol. 2022-5-12

[9]
Polyphasic Analysis Reveals Potential Petroleum Hydrocarbon Degradation and Biosurfactant Production by Rare Biosphere Thermophilic Bacteria From Deception Island, an Active Antarctic Volcano.

Front Microbiol. 2022-5-4

[10]
Absence of increased genomic variants in the cyanobacterium Chroococcidiopsis exposed to Mars-like conditions outside the space station.

Sci Rep. 2022-5-19

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