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空间自组织微生物群落中模式多样化的原因和后果。

Causes and consequences of pattern diversification in a spatially self-organizing microbial community.

机构信息

Department of Environmental Systems Science, Swiss Federal Institute of Technology (ETH), Zürich, Switzerland.

Department of Environmental Microbiology, Swiss Federal Institute of Aquatic Science and Technology (Eawag), Dübendorf, Switzerland.

出版信息

ISME J. 2021 Aug;15(8):2415-2426. doi: 10.1038/s41396-021-00942-w. Epub 2021 Mar 4.

Abstract

Surface-attached microbial communities constitute a vast amount of life on our planet. They contribute to all major biogeochemical cycles, provide essential services to our society and environment, and have important effects on human health and disease. They typically consist of different interacting genotypes that arrange themselves non-randomly across space (referred to hereafter as spatial self-organization). While spatial self-organization is important for the functioning, ecology, and evolution of these communities, the underlying determinants of spatial self-organization remain unclear. Here, we performed a combination of experiments, statistical modeling, and mathematical simulations with a synthetic cross-feeding microbial community consisting of two isogenic strains. We found that two different patterns of spatial self-organization emerged at the same length and time scales, thus demonstrating pattern diversification. This pattern diversification was not caused by initial environmental heterogeneity or by genetic heterogeneity within populations. Instead, it was caused by nongenetic heterogeneity within populations, and we provide evidence that the source of this nongenetic heterogeneity is local differences in the initial spatial positionings of individuals. We further demonstrate that the different patterns exhibit different community-level properties; namely, they have different expansion speeds. Together, our results demonstrate that pattern diversification can emerge in the absence of initial environmental heterogeneity or genetic heterogeneity within populations and can affect community-level properties, thus providing novel insights into the causes and consequences of microbial spatial self-organization.

摘要

附着在表面的微生物群落构成了我们星球上大量的生命。它们参与了所有主要的生物地球化学循环,为我们的社会和环境提供了必不可少的服务,并对人类健康和疾病有着重要的影响。它们通常由不同的相互作用的基因型组成,这些基因型在空间上非随机排列(以下简称空间自组织)。虽然空间自组织对这些群落的功能、生态和进化很重要,但空间自组织的潜在决定因素仍不清楚。在这里,我们使用由两个同源菌株组成的合成共养微生物群落进行了一系列实验、统计建模和数学模拟。我们发现,两种不同的空间自组织模式在相同的长度和时间尺度上出现,从而表现出模式多样化。这种模式多样化不是由初始环境异质性或种群内的遗传异质性引起的。相反,它是由种群内的非遗传异质性引起的,我们提供的证据表明,这种非遗传异质性的来源是个体初始空间定位的局部差异。我们进一步证明,不同的模式表现出不同的群落水平特性;也就是说,它们具有不同的扩展速度。总之,我们的研究结果表明,在没有初始环境异质性或种群内遗传异质性的情况下,模式多样化可以出现,并可以影响群落水平的特性,从而为微生物空间自组织的原因和后果提供了新的见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/57e8/8319339/0104c123b63a/41396_2021_942_Fig1_HTML.jpg

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