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鉴定植物病原菌的真菌病毒组。

Characterization of the Mycovirome of the Phytopathogenic Fungus, .

机构信息

Univ. Bordeaux, INRAE, UMR BFP, 33140 Villenave d'Ornon, France.

INRAE, UMR SAVE, ISVV, Labex Cote, 33140 Villenave d'Ornon, France.

出版信息

Viruses. 2021 Feb 27;13(3):375. doi: 10.3390/v13030375.

Abstract

is a fungal plant-pathogen belonging to the family , and is considered one of the most aggressive causal agents of the grapevine trunk disease (GTD) Botryosphaeria dieback. In this study, the mycovirome of a single strain of (COLB) was characterized by high throughput sequencing analysis of total RNA and subsequent bioinformatic analyses. Contig annotations, genome completions, and phylogenetic analyses allowed us to describe six novel mycoviruses belonging to four different viral families. The virome is composed of two victoriviruses in the family , one alphaendornavirus in the family , two mitoviruses in the family , and one narnavirus belonging to the family The presence of the co-infecting viruses was confirmed by sequencing the RT-PCR products generated from total nucleic acids extracted from COLB. This study shows that the mycovirome of a single strain is highly diverse and distinct from that previously described in strains isolated from grapevines.

摘要

是属于子囊菌门的一种真菌植物病原体,被认为是葡萄树干病害(GTD)葡萄茎溃疡病的最具侵略性的病原体之一。在这项研究中,通过对总 RNA 进行高通量测序分析和随后的生物信息学分析,对一株(COLB)的真菌病毒组进行了表征。通过对重叠群注释、基因组完整性和系统发育分析,我们描述了属于四个不同病毒科的六种新的真菌病毒。病毒组由两个在家族中的 victoriviruses 组成,一个在家族中的 alphaendornavirus,两个在家族中的 mitoviruses,以及一个属于家族的 narnavirus。通过对从 COLB 提取的总核酸进行 RT-PCR 产物测序,确认了共感染病毒的存在。本研究表明,单个菌株的真菌病毒组具有高度多样性,与以前从葡萄藤上分离的菌株中描述的病毒组明显不同。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9446/7997348/bd40773355d2/viruses-13-00375-g001.jpg

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