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高通量测序法测定未发酵和发酵淘米水中的微生物多样性及群落组成

Determination of Microbial Diversity and Community Composition in Unfermented and Fermented Washing Rice Water by High-Throughput Sequencing.

作者信息

Chen Youlin, Chen Haiming, Zhong Qiuping, Yun Yong-Huan, Chen Weijun, Chen Wenxue

机构信息

College of Food Sciences & Engineering, Hainan University, 58 People Road, Haikou, 570228, China.

Chunguang Agro-Product Processing Institute, Wenchang, 571333, China.

出版信息

Curr Microbiol. 2021 May;78(5):1730-1740. doi: 10.1007/s00284-021-02400-4. Epub 2021 Mar 11.

Abstract

Washing rice water (WRW) refers to the sewage produced by rice washing in China and other parts of Asia people's daily life. As in the WRW is rich a variety of nutrients, microorganisms are prone to multiply and pollute the environment. In this article, high-throughput sequencing is used to describe the microbial diversity in different fermentation time WRW. The results showed that the sequencing depth effectively covered the microbial species in the samples, and the bacterial community structure in the samples of WRW at different fermentation periods was rich in diversity. Preominant taxa included Proteobacteria (62%), Firmicutes (28%), approximately Cyanobacteria (10%) and Bacteroidetes (0.5%). The core WRW microbiome comprises Trabulsiella, Pseudomonas, Serratia, Lactobacillus, Erwinia, Enterobacter, Clostridium and Acinetobacter, some of which are potential beneficial microbes. The change of microbial community composition with the change of habitat was assessed. It was found that environmental factors had significant influence on the assembly structure of microbial community.

摘要

洗米水(WRW)是指在中国和亚洲其他地区人们日常生活中淘米产生的污水。由于洗米水中富含多种营养物质,微生物容易繁殖并污染环境。在本文中,采用高通量测序来描述不同发酵时间的洗米水中的微生物多样性。结果表明,测序深度有效地覆盖了样本中的微生物种类,不同发酵时期的洗米水样本中的细菌群落结构具有丰富的多样性。优势类群包括变形菌门(62%)、厚壁菌门(28%)、近似蓝细菌(10%)和拟杆菌门(0.5%)。洗米水的核心微生物群包括特拉布氏菌属、假单胞菌属、沙雷氏菌属、乳杆菌属、欧文氏菌属、肠杆菌属、梭菌属和不动杆菌属,其中一些是潜在的有益微生物。评估了微生物群落组成随栖息地变化的情况。发现环境因素对微生物群落的组装结构有显著影响。

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