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自组织分子分拣的最优性。

Optimality in Self-Organized Molecular Sorting.

机构信息

Institute of Condensed Matter Physics and Complex Systems, Department of Applied Science and Technology, Politecnico di Torino, Corso Duca degli Abruzzi 24, 10129 Torino, Italy.

Italian Institute for Genomic Medicine c/o Candiolo Cancer Institute, Fondazione del Piemonte per l'Oncologia (FPO), Istituto di Ricovero e Cura a Carattere Scientifico (IRCCS), Candiolo, 10060 Torino, Italy.

出版信息

Phys Rev Lett. 2021 Feb 26;126(8):088101. doi: 10.1103/PhysRevLett.126.088101.

DOI:10.1103/PhysRevLett.126.088101
PMID:33709726
Abstract

We introduce a simple physical picture to explain the process of molecular sorting, whereby specific proteins are concentrated and distilled into submicrometric lipid vesicles in eukaryotic cells. To this purpose, we formulate a model based on the coupling of spontaneous molecular aggregation with vesicle nucleation. Its implications are studied by means of a phenomenological theory describing the diffusion of molecules toward multiple sorting centers that grow due to molecule absorption and are extracted when they reach a sufficiently large size. The predictions of the theory are compared with numerical simulations of a lattice-gas realization of the model and with experimental observations. The efficiency of the distillation process is found to be optimal for intermediate aggregation rates, where the density of sorted molecules is minimal and the process obeys simple scaling laws. Quantitative measures of endocytic sorting performed in primary endothelial cells are compatible with the hypothesis that these optimal conditions are realized in living cells.

摘要

我们引入一个简单的物理图像来解释分子分拣的过程,在真核细胞中,特定的蛋白质被浓缩并分离到亚微米级的脂质小泡中。为此,我们基于自发分子聚集与囊泡成核的耦合,建立了一个模型。通过描述分子向多个因分子吸收而生长、当达到足够大小时被提取的分拣中心扩散的唯象理论来研究其含义。该理论的预测与模型的格子气实现的数值模拟和实验观测进行了比较。发现蒸馏过程的效率在中等聚集率下是最优的,此时分拣分子的密度最小,且过程遵循简单的标度律。在原代内皮细胞中进行的胞吞作用分拣的定量测量结果与以下假设是一致的,即在活细胞中可以实现这些最佳条件。

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1
Optimality in Self-Organized Molecular Sorting.自组织分子分拣的最优性。
Phys Rev Lett. 2021 Feb 26;126(8):088101. doi: 10.1103/PhysRevLett.126.088101.
2
Lipid sorting: lipids do it on their own.脂质分选:脂质自行完成分选。
Curr Biol. 2005 Jun 7;15(11):R421-3. doi: 10.1016/j.cub.2005.05.030.
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Phase separation and critical size in molecular sorting.分子分选过程中的相分离与临界尺寸
Phys Rev E. 2022 Oct;106(4-1):044412. doi: 10.1103/PhysRevE.106.044412.
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Sorting of multiple molecular species on cell membranes.细胞膜上多种分子物种的分拣。
Phys Rev E. 2023 Aug;108(2-1):024401. doi: 10.1103/PhysRevE.108.024401.
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Quantitative imaging of clathrin-mediated endocytosis.网格蛋白介导的胞吞作用的定量成像。
Curr Opin Cell Biol. 2018 Aug;53:105-110. doi: 10.1016/j.ceb.2018.06.005. Epub 2018 Jul 17.
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Lipids in endocytic membrane transport and sorting.内吞膜运输与分选过程中的脂质
Curr Opin Cell Biol. 2003 Aug;15(4):382-8. doi: 10.1016/s0955-0674(03)00078-4.
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Tyrosine-based endocytic motifs stimulate oligomerization of AP-2 adaptor complexes.基于酪氨酸的内吞基序刺激AP-2衔接复合物的寡聚化。
Eur J Cell Biol. 2002 Dec;81(12):647-53. doi: 10.1078/0171-9335-00289.
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Protein and lipid sorting from the trans-Golgi network to the plasma membrane in polarized cells.在极化细胞中蛋白质和脂质从反式高尔基体网络到质膜的分选
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Lipid domain formation and dynamics in giant unilamellar vesicles explored by fluorescence correlation spectroscopy.通过荧光相关光谱法探究巨型单层囊泡中的脂域形成与动力学。
J Struct Biol. 2004 Jul;147(1):77-89. doi: 10.1016/j.jsb.2003.09.021.
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Retromer-Mediated Protein Sorting and Vesicular Trafficking.逆转录酶介导的蛋白质分选与囊泡运输
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