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人口统计学实验室,一款用于评估人口增长的教育应用程序:非结构化模型和矩阵模型。

Demography_Lab, an educational application to evaluate population growth: Unstructured and matrix models.

作者信息

Arrontes Julio

机构信息

Depto. Biología de Organismos y Sistemas University of Oviedo Oviedo Spain.

出版信息

Ecol Evol. 2021 Jan 19;11(5):1940-1956. doi: 10.1002/ece3.7170. eCollection 2021 Mar.

Abstract

Training in Population Ecology asks for scalable applications capable of embarking students on a trip from basic concepts to the projection of populations under the various effects of density dependence and stochasticity. Demography_Lab is an educational tool for teaching Population Ecology aspiring to cover such a wide range of objectives. The application uses stochastic models to evaluate the future of populations. Demography_Lab may accommodate a wide range of life cycles and can construct models for populations with and without an age or stage structure. Difference equations are used for unstructured populations and matrix models for structured populations. Both types of models operate in discrete time. Models can be very simple, constructed with very limited demographic information or parameter-rich, with a complex density-dependence structure and detailed effects of the different sources of stochasticity. Demography_Lab allows for deterministic projections, asymptotic analysis, the extraction of confidence intervals for demographic parameters, and stochastic projections. Stochastic population growth is evaluated using up to three sources of stochasticity: environmental and demographic stochasticity and sampling error in obtaining the projection matrix. The user has full control on the effect of stochasticity on vital rates. The effect of the three sources of stochasticity may be evaluated independently for each vital rate. The user has also full control on density dependence. It may be included as a ceiling population size controlling the number of individuals in the population or it may be evaluated independently for each vital rate. Sensitivity analysis can be done for the asymptotic population growth rate or for the probability of extinction. Elasticity of the probability of extinction may be evaluated in response to changes in vital rates, and in response to changes in the intensity of density dependence and environmental stochasticity.

摘要

种群生态学培训需要可扩展的应用程序,能够引导学生从基本概念出发,研究在密度依赖和随机性的各种影响下种群的预测。Demography_Lab是一款用于教授种群生态学的教育工具,旨在实现如此广泛的目标。该应用程序使用随机模型来评估种群的未来。Demography_Lab可以适应广泛的生命周期,并能为有或没有年龄或阶段结构的种群构建模型。对于无结构种群使用差分方程,对于结构化种群使用矩阵模型。这两种类型的模型都在离散时间内运行。模型可以非常简单,仅用非常有限的人口统计信息构建,也可以参数丰富,具有复杂的密度依赖结构以及不同随机性来源的详细影响。Demography_Lab允许进行确定性预测、渐近分析、提取人口统计参数的置信区间以及随机预测。使用多达三种随机性来源评估随机种群增长:环境和人口统计随机性以及获取投影矩阵时的抽样误差。用户可以完全控制随机性对生命率的影响。可以针对每个生命率独立评估这三种随机性来源的影响。用户还可以完全控制密度依赖。它可以作为控制种群个体数量的种群规模上限包含在内,也可以针对每个生命率独立评估。可以对渐近种群增长率或灭绝概率进行敏感性分析。可以评估灭绝概率的弹性,以响应生命率的变化,以及响应密度依赖强度和环境随机性的变化。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/63c5/7920771/15a281d847cc/ECE3-11-1940-g001.jpg

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