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在印度耐碳青霉烯类细菌的克隆扩增中观察到的独特移动遗传元件。

Distinctive Mobile Genetic Elements Observed in the Clonal Expansion of Carbapenem-Resistant in India.

作者信息

Shankar Chaitra, Jacob Jobin John, Sugumar Suganya Gopal, Natarajan Lavanya, Rodrigues Camilla, Mathur Purva, Mukherjee Dip Narayan, Sharma Anita, Chitnis D S, Bharagava Anudita, Manesh Abi, Gunasekaran Karthik, Veeraraghavan Balaji

机构信息

Department of Clinical Microbiology, Christian Medical College, Vellore, Tamil Nadu, India.

Department of Laboratory Medicine, All India Institute of Medical Sciences Trauma Centre, New Delhi, India.

出版信息

Microb Drug Resist. 2021 Aug;27(8):1096-1104. doi: 10.1089/mdr.2020.0316. Epub 2021 Mar 15.

Abstract

(Kp), a common multidrug-resistant pathogen, causes a wide spectrum of nosocomial infections with high rates of morbidity and mortality. The emergence of pan drug-resistant international high-risk clones such as ST258, ST14, ST15, ST147, and ST101 is a global concern. This study was performed to investigate the carbapenemases, the plasmid profile, and the clonal relationship among Indian . A total of 290 isolates from seven centers in India were characterized to determine sequence types (STs) and carbapenemases. A subset of isolates was subjected to whole genome sequencing and hybrid genome assembly to obtain the complete genome. Plasmids carrying carbapenemases were characterized to determine the dissemination of carbapenem-resistant (CR) . From this study, 75 different STs were observed with ST231 being predominant. About 79% of the analyzed isolates were CR with 59% ( = 136) producing OXA48-like carbapenemases. While ST231 was the predominant clone among the OXA48-like producers; NDM producers and NDM+OXA48-like producers were mostly associated with ST14. Interestingly, 61% ( = 138) of the total CR were colistin resistant, belonging to 22 different STs. Plasmid profiling shows that was exclusively carried by ColKP3, whereas was associated with IncFII-like plasmids. The highly mosaic genome of coupled with the diverse ecological niches in India makes it a hotspot for antimicrobial resistance, leading to increased morbidity and mortality. Extensive molecular surveillance of the clonal spread of could help in understanding AMR dynamics and thus rework therapeutic management.

摘要

肺炎克雷伯菌(Kp)是一种常见的多重耐药病原体,可引发多种医院感染,发病率和死亡率很高。ST258、ST14、ST15、ST147和ST101等泛耐药国际高危克隆株的出现是一个全球关注的问题。本研究旨在调查印度肺炎克雷伯菌的碳青霉烯酶、质粒图谱及克隆关系。对来自印度七个中心的总共290株分离株进行特征分析,以确定序列类型(STs)和碳青霉烯酶。对一部分分离株进行全基因组测序和混合基因组组装以获得完整基因组。对携带碳青霉烯酶的质粒进行特征分析,以确定耐碳青霉烯(CR)的传播情况。通过本研究,观察到75种不同的STs,其中ST231占主导地位。约79%的分析分离株为CR,59%(=136)产生OXA48样碳青霉烯酶。虽然ST231是OXA48样产生菌中的主要克隆株;新德里金属β-内酰胺酶(NDM)产生菌和NDM+OXA48样产生菌大多与ST14相关。有趣的是,总共CR分离株中有61%(=138)对黏菌素耐药,属于22种不同的STs。质粒图谱显示blaNDM-1仅由ColKP3携带,而blaOXA-48-like与IncFII样质粒相关。肺炎克雷伯菌高度嵌合的基因组以及印度多样的生态位使其成为抗菌药物耐药性的热点地区,导致发病率和死亡率增加。对肺炎克雷伯菌克隆传播进行广泛的分子监测有助于了解抗菌药物耐药动态,从而重新制定治疗管理方案。

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