• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

调控网络中的拓扑特征使小细胞肺癌表现出异质性。

Topological signatures in regulatory network enable phenotypic heterogeneity in small cell lung cancer.

机构信息

Centre for BioSystems Science and Engineering, Indian Institute of Science, Bangalore, India.

Undergraduate Programme, Indian Institute of Science, Bangalore, India.

出版信息

Elife. 2021 Mar 17;10:e64522. doi: 10.7554/eLife.64522.

DOI:10.7554/eLife.64522
PMID:33729159
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8012062/
Abstract

Phenotypic (non-genetic) heterogeneity has significant implications for the development and evolution of organs, organisms, and populations. Recent observations in multiple cancers have unraveled the role of phenotypic heterogeneity in driving metastasis and therapy recalcitrance. However, the origins of such phenotypic heterogeneity are poorly understood in most cancers. Here, we investigate a regulatory network underlying phenotypic heterogeneity in small cell lung cancer, a devastating disease with no molecular targeted therapy. Discrete and continuous dynamical simulations of this network reveal its multistable behavior that can explain co-existence of four experimentally observed phenotypes. Analysis of the network topology uncovers that multistability emerges from two teams of players that mutually inhibit each other, but members of a team activate one another, forming a 'toggle switch' between the two teams. Deciphering these topological signatures in cancer-related regulatory networks can unravel their 'latent' design principles and offer a rational approach to characterize phenotypic heterogeneity in a tumor.

摘要

表型(非遗传)异质性对器官、生物体和种群的发育和进化具有重要意义。最近在多种癌症中的观察结果揭示了表型异质性在推动转移和治疗抗性方面的作用。然而,在大多数癌症中,这种表型异质性的起源还知之甚少。在这里,我们研究了小细胞肺癌中表型异质性的调控网络,小细胞肺癌是一种毁灭性疾病,目前没有分子靶向治疗方法。对该网络的离散和连续动力学模拟揭示了其多稳态行为,该行为可以解释四种实验观察到的表型的共存。对网络拓扑结构的分析表明,多稳态性源于相互抑制的两组参与者,但同一组的成员会相互激活,从而在两组之间形成一个“切换开关”。在癌症相关调控网络中破译这些拓扑特征,可以揭示它们的“潜在”设计原则,并为表征肿瘤中的表型异质性提供一种合理的方法。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7018/8012062/1a934b8b8c29/elife-64522-fig5-figsupp1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7018/8012062/a84728af1517/elife-64522-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7018/8012062/91abe13b36d3/elife-64522-fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7018/8012062/4165d1dcd9a9/elife-64522-fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7018/8012062/09a405bb009b/elife-64522-fig3-figsupp1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7018/8012062/4069e44af195/elife-64522-fig3-figsupp2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7018/8012062/16773e1b25de/elife-64522-fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7018/8012062/afd16fb5a454/elife-64522-fig4-figsupp1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7018/8012062/7cfa41c8aac6/elife-64522-fig4-figsupp2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7018/8012062/5f14742b2200/elife-64522-fig4-figsupp3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7018/8012062/55d3345f7979/elife-64522-fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7018/8012062/1a934b8b8c29/elife-64522-fig5-figsupp1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7018/8012062/a84728af1517/elife-64522-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7018/8012062/91abe13b36d3/elife-64522-fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7018/8012062/4165d1dcd9a9/elife-64522-fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7018/8012062/09a405bb009b/elife-64522-fig3-figsupp1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7018/8012062/4069e44af195/elife-64522-fig3-figsupp2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7018/8012062/16773e1b25de/elife-64522-fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7018/8012062/afd16fb5a454/elife-64522-fig4-figsupp1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7018/8012062/7cfa41c8aac6/elife-64522-fig4-figsupp2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7018/8012062/5f14742b2200/elife-64522-fig4-figsupp3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7018/8012062/55d3345f7979/elife-64522-fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7018/8012062/1a934b8b8c29/elife-64522-fig5-figsupp1.jpg

相似文献

1
Topological signatures in regulatory network enable phenotypic heterogeneity in small cell lung cancer.调控网络中的拓扑特征使小细胞肺癌表现出异质性。
Elife. 2021 Mar 17;10:e64522. doi: 10.7554/eLife.64522.
2
Novel Hybrid Phenotype Revealed in Small Cell Lung Cancer by a Transcription Factor Network Model That Can Explain Tumor Heterogeneity.转录因子网络模型揭示小细胞肺癌中的新型混合表型,该模型可解释肿瘤异质性。
Cancer Res. 2017 Mar 1;77(5):1063-1074. doi: 10.1158/0008-5472.CAN-16-1467. Epub 2016 Dec 8.
3
Landscape of epithelial-mesenchymal plasticity as an emergent property of coordinated teams in regulatory networks.作为调控网络中协调团队的涌现特性,上皮-间充质可塑性的全景
Elife. 2022 Oct 21;11:e76535. doi: 10.7554/eLife.76535.
4
System analysis identifies distinct and common functional networks governed by transcription factor ASCL1, in glioma and small cell lung cancer.系统分析确定了在胶质瘤和小细胞肺癌中由转录因子ASCL1调控的不同且共同的功能网络。
Mol Biosyst. 2017 Jul 25;13(8):1481-1494. doi: 10.1039/c6mb00851h.
5
YAP and TAZ modulate cell phenotype in a subset of small cell lung cancer.YAP和TAZ在一部分小细胞肺癌中调节细胞表型。
Cancer Sci. 2016 Dec;107(12):1755-1766. doi: 10.1111/cas.13078. Epub 2016 Nov 25.
6
MYC, MAX, and small cell lung cancer.MYC、MAX 和小细胞肺癌。
Cancer Discov. 2014 Mar;4(3):273-4. doi: 10.1158/2159-8290.CD-14-0069.
7
MAX inactivation in small cell lung cancer disrupts MYC-SWI/SNF programs and is synthetic lethal with BRG1.MAX 失活导致小细胞肺癌中 MYC-SWI/SNF 程序紊乱,并与 BRG1 产生合成致死性。
Cancer Discov. 2014 Mar;4(3):292-303. doi: 10.1158/2159-8290.CD-13-0799. Epub 2013 Dec 20.
8
Identification of functional modules that correlate with phenotypic difference: the influence of network topology.鉴定与表型差异相关的功能模块:网络拓扑结构的影响。
Genome Biol. 2010;11(2):R23. doi: 10.1186/gb-2010-11-2-r23. Epub 2010 Feb 26.
9
Robustness in phenotypic plasticity and heterogeneity patterns enabled by EMT networks.上皮-间质转化网络使表型可塑性和异质性模式具有稳健性。
Biophys J. 2022 Oct 4;121(19):3600-3615. doi: 10.1016/j.bpj.2022.07.017. Epub 2022 Jul 20.
10
Co-expression network analysis identifies Spleen Tyrosine Kinase (SYK) as a candidate oncogenic driver in a subset of small-cell lung cancer.共表达网络分析确定脾酪氨酸激酶(SYK)为小细胞肺癌一个亚群中的候选致癌驱动因子。
BMC Syst Biol. 2013;7 Suppl 5(Suppl 5):S1. doi: 10.1186/1752-0509-7-S5-S1. Epub 2013 Dec 9.

引用本文的文献

1
Fluctuation structure predicts genome-wide perturbation outcomes.波动结构可预测全基因组扰动结果。
Res Sq. 2025 Aug 12:rs.3.rs-7304871. doi: 10.21203/rs.3.rs-7304871/v1.
2
Emergent dynamics of cellular decision making in multi-node mutually repressive regulatory networks.多节点相互抑制调控网络中细胞决策的涌现动力学
J R Soc Interface. 2025 Aug;22(229):20250190. doi: 10.1098/rsif.2025.0190. Epub 2025 Aug 20.
3
Low dimensionality of phenotypic space as an emergent property of coordinated teams in biological regulatory networks.

本文引用的文献

1
A biobank of small cell lung cancer CDX models elucidates inter- and intratumoral phenotypic heterogeneity.一个小细胞肺癌CDX模型生物样本库阐明了肿瘤间和肿瘤内的表型异质性。
Nat Cancer. 2020 Apr;1(4):437-451. doi: 10.1038/s43018-020-0046-2. Epub 2020 Apr 13.
2
Single-cell analyses reveal increased intratumoral heterogeneity after the onset of therapy resistance in small-cell lung cancer.单细胞分析揭示小细胞肺癌发生治疗抵抗后肿瘤内异质性增加。
Nat Cancer. 2020 Apr;1:423-436. doi: 10.1038/s43018-019-0020-z. Epub 2020 Feb 17.
3
Profiling the Non-genetic Origins of Cancer Drug Resistance with a Single-Cell Functional Genomics Approach Using Predictive Cell Dynamics.
表型空间的低维性作为生物调控网络中协同团队的一种涌现特性。
iScience. 2025 Jan 2;28(2):111730. doi: 10.1016/j.isci.2024.111730. eCollection 2025 Feb 21.
4
Amino Acids Frequency and Interaction Trends: Comprehensive Analysis of Experimentally Validated Viral Antigen-Antibody Complexes.氨基酸频率与相互作用趋势:对经实验验证的病毒抗原-抗体复合物的综合分析
Mol Biotechnol. 2025 Jan 8. doi: 10.1007/s12033-024-01361-w.
5
Operating principles of interconnected feedback loops driving cell fate transitions.驱动细胞命运转变的相互连接反馈回路的运作原理。
NPJ Syst Biol Appl. 2025 Jan 2;11(1):2. doi: 10.1038/s41540-024-00483-w.
6
Multistability and predominant hybrid phenotypes in a four node mutually repressive network of Th1/Th2/Th17/Treg differentiation.四节点相互抑制的 Th1/Th2/Th17/Treg 分化网络中的多稳定性和主要混合表型。
NPJ Syst Biol Appl. 2024 Oct 24;10(1):123. doi: 10.1038/s41540-024-00433-6.
7
Increased prevalence of hybrid epithelial/mesenchymal state and enhanced phenotypic heterogeneity in basal breast cancer.基底样乳腺癌中上皮/间充质混合状态的患病率增加及表型异质性增强。
iScience. 2024 May 27;27(7):110116. doi: 10.1016/j.isci.2024.110116. eCollection 2024 Jul 19.
8
Gene regulatory network topology governs resistance and treatment escape in glioma stem-like cells.基因调控网络拓扑结构控制神经胶质瘤干细胞的耐药性和治疗逃逸。
Sci Adv. 2024 Jun 7;10(23):eadj7706. doi: 10.1126/sciadv.adj7706.
9
Proneural-mesenchymal antagonism dominates the patterns of phenotypic heterogeneity in glioblastoma.神经干细胞样-间充质拮抗作用主导胶质母细胞瘤的表型异质性模式。
iScience. 2024 Feb 13;27(3):109184. doi: 10.1016/j.isci.2024.109184. eCollection 2024 Mar 15.
10
Redox signalling regulates breast cancer metastasis via phenotypic and metabolic reprogramming due to p63 activation by HIF1α.氧化还原信号通过由于 HIF1α 激活 p63 引起的表型和代谢重编程来调节乳腺癌转移。
Br J Cancer. 2024 Apr;130(6):908-924. doi: 10.1038/s41416-023-02522-5. Epub 2024 Jan 18.
利用预测细胞动力学的单细胞功能基因组学方法描绘癌症药物耐药性的非遗传起源。
Cell Syst. 2020 Oct 21;11(4):367-374.e5. doi: 10.1016/j.cels.2020.08.019. Epub 2020 Sep 23.
4
SCLC-CellMiner: A Resource for Small Cell Lung Cancer Cell Line Genomics and Pharmacology Based on Genomic Signatures.SCLC-CellMiner:一个基于基因组特征的小细胞肺癌细胞系基因组学和药理学资源。
Cell Rep. 2020 Oct 20;33(3):108296. doi: 10.1016/j.celrep.2020.108296.
5
SCLC Subtypes Defined by ASCL1, NEUROD1, POU2F3, and YAP1: A Comprehensive Immunohistochemical and Histopathologic Characterization.SCLC 亚型的定义:ASCL1、NEUROD1、POU2F3 和 YAP1:全面的免疫组化和组织病理学特征。
J Thorac Oncol. 2020 Dec;15(12):1823-1835. doi: 10.1016/j.jtho.2020.09.009. Epub 2020 Oct 1.
6
Multi-stability in cellular differentiation enabled by a network of three mutually repressing master regulators.由三个相互抑制的主调控因子组成的网络实现细胞分化中的多稳定性。
J R Soc Interface. 2020 Sep;17(170):20200631. doi: 10.1098/rsif.2020.0631. Epub 2020 Sep 30.
7
A Non-genetic Mechanism Involving the Integrin β4/Paxillin Axis Contributes to Chemoresistance in Lung Cancer.一种涉及整合素β4/桩蛋白轴的非遗传机制导致肺癌化疗耐药。
iScience. 2020 Aug 22;23(9):101496. doi: 10.1016/j.isci.2020.101496. eCollection 2020 Sep 25.
8
Biological Networks Regulating Cell Fate Choice Are Minimally Frustrated.调控细胞命运选择的生物网络的最小阻碍。
Phys Rev Lett. 2020 Aug 21;125(8):088101. doi: 10.1103/PhysRevLett.125.088101.
9
Small Cell Lung Cancer from Traditional to Innovative Therapeutics: Building a Comprehensive Network to Optimize Clinical and Translational Research.小细胞肺癌:从传统疗法到创新疗法——构建优化临床与转化研究的综合网络
J Clin Med. 2020 Jul 30;9(8):2433. doi: 10.3390/jcm9082433.
10
The Rare YAP1 Subtype of SCLC Revisited in a Biobank of 39 Circulating Tumor Cell Patient Derived Explant Models: A Brief Report.在一个包含 39 个循环肿瘤细胞患者衍生外植体模型的生物库中重新研究罕见的 SCLC YAP1 亚型:简要报告。
J Thorac Oncol. 2020 Dec;15(12):1836-1843. doi: 10.1016/j.jtho.2020.07.008. Epub 2020 Jul 25.