Xiang Xiaochao, Guan Fulin, Jiao Fenglong, Li Hang, Zhang Wanjun, Zhang Yangjun, Qin Weijie
National Center for Protein Sciences Beijing, State Key Laboratory of Proteomics, Beijing Proteome Research Center, Beijing Institute of Lifeomics, Beijing 102206, PR China.
Anal Methods. 2021 Apr 7;13(13):1591-1600. doi: 10.1039/d1ay00102g. Epub 2021 Mar 17.
Exosomes are small membrane-bound vesicles secreted by most cell types and play an important role in cell-to-cell communication. Increasing evidence shows that exosomal proteins in urine may be used as novel biomarkers for certain diseases. Purified urinary exosomes are necessary for downstream studies and application development. However, conventional methods for exosome isolation and enrichment are technically challenging and time-consuming. Poor specificity, low recovery and instrumental dependence also limit the use of these methods. It is particularly urgent to develop a rapid and efficient extraction method for basic research and clinical application. Particularly, urine is a dilute solution system with relatively low abundance of exosomes, due to which the isolation of urinary exosome requires more efficient technology. Here, we propose a new strategy for facile exosome isolation from human urine by utilizing the ultrafiltration technique and the specific interaction of TiO with the phosphate groups on the lipid bilayer of exosomes. Downstream characterization and proteomic analysis indicate that high-quality exosomes can be obtained from human urine by this ultrafiltration-TiO series method in 20 minutes, and 91.5% exosomes with an intact structure are captured from urine by this method. Moreover, 1874 protein groups have been identified through LC-MS. The results show that the protein identification of our method is 23% higher at least than those obtained by conventional strategies. We also identified 30 differential proteins by comparing the urinary exosomes from healthy male and female volunteers. These proteins are related to biological processes, such as lipid metabolism, fatty acid metabolism and nucleotide metabolism. Our analysis reveals that combining conventional ultrafiltration and TiO-based isolation is ideal to overcome the inherent limitations of identification of exosome proteins derived from urine, and yield highly pure exosome components for downstream proteomic analysis.
外泌体是大多数细胞类型分泌的小膜泡,在细胞间通讯中发挥重要作用。越来越多的证据表明,尿液中的外泌体蛋白可用作某些疾病的新型生物标志物。纯化的尿外泌体对于下游研究和应用开发至关重要。然而,传统的外泌体分离和富集方法在技术上具有挑战性且耗时。特异性差、回收率低和对仪器的依赖也限制了这些方法的使用。开发一种快速有效的提取方法用于基础研究和临床应用尤为迫切。特别是,尿液是一种稀释的溶液系统,外泌体丰度相对较低,因此尿外泌体的分离需要更高效的技术。在此,我们提出了一种新策略,通过利用超滤技术以及TiO与外泌体脂质双层上磷酸基团的特异性相互作用,从人尿液中轻松分离外泌体。下游表征和蛋白质组学分析表明,通过这种超滤-TiO系列方法可在20分钟内从人尿液中获得高质量的外泌体,该方法从尿液中捕获了结构完整的91.5%的外泌体。此外,通过液相色谱-质谱联用鉴定出了1874个蛋白质组。结果表明,我们方法的蛋白质鉴定率至少比传统策略高23%。我们还通过比较健康男性和女性志愿者的尿外泌体鉴定出了30种差异蛋白。这些蛋白质与脂质代谢、脂肪酸代谢和核苷酸代谢等生物过程相关。我们的分析表明,将传统超滤和基于TiO的分离相结合是克服源自尿液的外泌体蛋白鉴定固有局限性的理想方法,并能产生用于下游蛋白质组学分析的高纯度外泌体成分。