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新种,一种从甲藻藻际分离出的新型海洋细菌。

sp. nov., a novel marine bacterium isolated from the phycosphere of dinoflagellate .

作者信息

Chen Yuerong, Hu Zhong, Wang Hui

机构信息

Biology Department and Institute of Marine Sciences, College of Science, Shantou University, Shantou, PR China.

Guangdong Provincial Key Laboratory of Marine Biotechnology, Shantou University, Shantou, PR China.

出版信息

Int J Syst Evol Microbiol. 2019 Jun;71(3). doi: 10.1099/ijsem.0.004764. Epub 2021 Mar 18.

Abstract

A Gram-stain-negative, aerobic, rod-shaped and non-motile bacterium was isolated from a liquid culture of dinoflagellate and further designated as LMIT004. Optimal growth was observed at 25 °C, pH 7.0 and in the presence of 2 % (w/v) NaCl. Oxidase and catalase were positive. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain LMIT004 showed high similarities to type strains SM17004 (96.77 %) and JCM11811 (95.60 %) but formed a separate branch in the genus . The G+C content of strain LMIT004 was 39.0 mol%. The dominant fatty acids were iso-C and iso-C G. The polar lipids mainly contained phosphatidylethanolamine, five unidentified phospholipids and five unidentified polar lipids. The sole respiratory quinone was menaquinone-6 (MK-6). The draft genome of the type strain was 3.88 Mbp. The average nucleotide identity values between strain LMIT004 and the two reference strains SM17004 and JCM11811 were 77.47 and 73.49 %, respectively. Based on the polyphasic analysis, strain LMIT004 is suggested to represent a novel specie in the genus of , for which the name sp. nov. is proposed. The type strain is LMIT004 (=CICC 24871=KCTC 72948).

摘要

从一种甲藻的液体培养物中分离出一株革兰氏阴性、需氧、杆状且不运动的细菌,该细菌被进一步命名为LMIT004。在25 °C、pH 7.0以及2 %(w/v)NaCl存在的条件下观察到其生长最佳。氧化酶和过氧化氢酶呈阳性。基于16S rRNA基因序列的系统发育分析表明,菌株LMIT004与模式菌株SM17004(96.77 %)和JCM11811(95.60 %)具有高度相似性,但在该属中形成了一个单独的分支。菌株LMIT004的G+C含量为39.0 mol%。主要脂肪酸为异-C和异-C G。极性脂质主要包含磷脂酰乙醇胺、五种未鉴定的磷脂和五种未鉴定的极性脂质。唯一的呼吸醌是甲基萘醌-6(MK-6)。模式菌株的基因组草图为3.88 Mbp。菌株LMIT004与两个参考菌株SM17004和JCM11811之间的平均核苷酸同一性值分别为77.47%和73.49 %。基于多相分析,建议菌株LMIT004代表该属中的一个新物种,为此提出新物种名称 sp. nov.。模式菌株为LMIT004(=CICC 24871=KCTC 72948)。

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