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静水压力对鸡蛋清溶菌酶晶体中溶剂的影响。

Effect of hydrostatic pressure on the solvent in crystals of hen egg-white lysozyme.

作者信息

Kundrot C E, Richards F M

机构信息

Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06511.

出版信息

J Mol Biol. 1988 Mar 20;200(2):401-10. doi: 10.1016/0022-2836(88)90249-5.

Abstract

The mass density of protein crystals can be measured in Ficoll gradients as a function of hydrostatic pressure. Carbon tetrachloride-toluene mixtures provide convenient density markers, and the compressibility of these standards is reported. Measurements on tetragonal crystals of hen egg-white lysozyme yielded densities at room temperature of 1.2367(+/- 0.0010) g cm-3 at 1 atm and 1.2586(+/- 0.0017) g cm-3 at 1000 atm (1 atm = 101,325 Pa). When combined with the unit cell dimensions at these two pressures these values lead to an estimated compression (fractional change in volume) of the crystal solvent at 1000 atm of 0.0369(+/- 0.0054). This value is comparable to that of a 0.7 M solution of NaCl. From an approximate estimate of the Donnan effect for the crystal in the 1.4 M-NaCl mother liquor, the crystal solvent contains 0.8 M-Na+ and 2.5 M-Cl-. It is concluded that the compressibility of solvent in lysozyme crystals is, within experimental error, the same as bulk solvent and does not exhibit the dramatically altered compressibility expected of an ice or glass-like solid. The crystallographically observable water sites, 151 at 1 atm and 163 at 1000 atm, showed a tendency to increase the number of hydrogen bonds made to other water sites at the expense of hydrogen bonds made to protein. The explanation for this phenomenon is presently unknown. Water sites that occur in both structures tend to have comparable temperature factors and show some tendency to follow the pressure-induced changes in protein atom positions. The compression expected for the water molecules themselves is too small to be observable at the resolution of the X-ray data collected in this study.

摘要

蛋白质晶体的质量密度可在菲可梯度中作为静水压力的函数进行测量。四氯化碳 - 甲苯混合物提供了方便的密度标记物,并报告了这些标准物的压缩性。对鸡蛋清溶菌酶四方晶体的测量得出,在室温下,1个大气压时密度为1.2367(±0.0010)g/cm³,1000个大气压时密度为1.2586(±0.0017)g/cm³(1个大气压 = 101,325帕斯卡)。当将这两个压力下的晶胞尺寸与这些值相结合时,这些值导致估计在1000个大气压下晶体溶剂的压缩率(体积分数变化)为0.0369(±0.0054)。该值与0.7M氯化钠溶液的值相当。根据对1.4M氯化钠母液中晶体的唐南效应的近似估计,晶体溶剂含有0.8M - Na⁺和2.5M - Cl⁻。得出的结论是,在实验误差范围内,溶菌酶晶体中溶剂的压缩性与本体溶剂相同,并且没有表现出冰或玻璃状固体预期的显著改变的压缩性。晶体学上可观察到的水位点,1个大气压下为151个,1000个大气压下为163个,显示出以与蛋白质形成的氢键为代价增加与其他水位点形成的氢键数量的趋势。目前尚不清楚这种现象的解释。在两种结构中都出现的水位点往往具有相当的温度因子,并显示出一些跟随压力诱导的蛋白质原子位置变化的趋势。水分子本身预期的压缩太小,在本研究收集的X射线数据分辨率下无法观察到。

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