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使用 Gibson 组装和斑点滴定法构建和定量可选择的蛋白质剪接传感器。

Construction and Quantitation of a Selectable Protein Splicing Sensor Using Gibson Assembly and Spot Titers.

机构信息

Wadsworth Center, New York State Department of Health, Albany, New York.

Signature Science, LLC, Austin, Texas.

出版信息

Curr Protoc. 2021 Mar;1(3):e82. doi: 10.1002/cpz1.82.

DOI:10.1002/cpz1.82
PMID:33739627
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7988948/
Abstract

Inteins (intervening proteins) are translated within host proteins and removed through protein splicing. Conditional protein splicing (CPS), where the rate and accuracy of splicing are highly dependent on environmental cues, has emerged as a novel form of post-translational regulation. While CPS has been demonstrated for several inteins in vitro, a comprehensive understanding of inteins requires tools to quantitatively monitor their activity within the cellular context. Here, we describe a method for construction of a splicing-dependent system that can be used to quantitatively assay for conditions that modulate protein splicing. © 2021 Wiley Periodicals LLC. Basic Protocol 1: Construction of an intein-containing KanR2 library using Gibson assembly Basic Protocol 2: Phenotype determination using quantitative spot titers Support Protocol 1: Preparation of LB agar plates for spot titers Support Protocol 2: Preparation and transformation of competent M. smegmatis cells.

摘要

内肽 ( intervening proteins) 在宿主蛋白内被翻译,并通过蛋白剪接去除。条件性蛋白剪接 (CPS) 是一种新型的翻译后调控方式,其剪接的速率和准确性高度依赖于环境线索。尽管已经在体外对几种内肽进行了 CPS 实验,但要全面了解内肽,还需要工具来定量监测它们在细胞环境中的活性。本文描述了一种构建依赖剪接的系统的方法,可用于定量测定调节蛋白剪接的条件。© 2021 威立出版公司。 基本方案 1:使用 Gibson 组装构建含内肽的 KanR2 文库 基本方案 2:使用定量点滴定法进行表型测定 支持方案 1:用于点滴定的 LB 琼脂平板的制备 支持方案 2:制备和转化感受态 M. smegmatis 细胞

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引用本文的文献

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Intein Inhibitors as Novel Antimicrobials: Protein Splicing in Human Pathogens, Screening Methods, and Off-Target Considerations.内含肽抑制剂作为新型抗菌剂:人类病原体中的蛋白质剪接、筛选方法及脱靶考量
Front Mol Biosci. 2021 Oct 7;8:752824. doi: 10.3389/fmolb.2021.752824. eCollection 2021.
2
Reactive Chlorine Species Reversibly Inhibit DnaB Protein Splicing in Mycobacteria.活性氯物种可使分枝杆菌中的 DnaB 蛋白剪接反应可逆抑制。
Microbiol Spectr. 2021 Oct 31;9(2):e0030121. doi: 10.1128/Spectrum.00301-21. Epub 2021 Sep 22.

本文引用的文献

1
Conditional DnaB Protein Splicing Is Reversibly Inhibited by Zinc in Mycobacteria.条件性 DnaB 蛋白剪接可被分枝杆菌中的锌可逆抑制。
mBio. 2020 Jul 14;11(4):e01403-20. doi: 10.1128/mBio.01403-20.
2
Spliceosomal Prp8 intein at the crossroads of protein and RNA splicing.剪接体 Prp8 内含肽处于蛋白质和 RNA 剪接的交汇点。
PLoS Biol. 2019 Oct 10;17(10):e3000104. doi: 10.1371/journal.pbio.3000104. eCollection 2019 Oct.
3
Mechanism of Single-Stranded DNA Activation of Recombinase Intein Splicing.单链 DNA 激活重组酶内含肽剪接的机制。
Biochemistry. 2019 Aug 6;58(31):3335-3339. doi: 10.1021/acs.biochem.9b00506. Epub 2019 Jul 23.
4
Cisplatin protects mice from challenge of by targeting the Prp8 intein.顺铂通过靶向 Prp8 内含肽保护小鼠免受 的挑战。
Emerg Microbes Infect. 2019;8(1):895-908. doi: 10.1080/22221751.2019.1625727.
5
Biotechnological Applications of Protein Splicing.蛋白质剪接的生物技术应用。
Curr Protein Pept Sci. 2019;20(5):408-424. doi: 10.2174/1389203720666190208110416.
6
Mycobacterial DnaB helicase intein as oxidative stress sensor.分枝杆菌 DnaB 解旋酶内含肽作为氧化应激传感器。
Nat Commun. 2018 Oct 19;9(1):4363. doi: 10.1038/s41467-018-06554-x.
7
Conditional Protein Splicing Switch in Hyperthermophiles through an Intein-Extein Partnership.通过内含肽-外显肽的合作实现超嗜热菌中的条件蛋白剪接开关。
mBio. 2018 Jan 30;9(1):e02304-17. doi: 10.1128/mBio.02304-17.
8
Inteins.内含子
Curr Biol. 2017 Mar 20;27(6):R204-R206. doi: 10.1016/j.cub.2017.01.016.
9
Protein splicing of a recombinase intein induced by ssDNA and DNA damage.由单链DNA和DNA损伤诱导的重组酶内含肽的蛋白质剪接
Genes Dev. 2016 Dec 15;30(24):2663-2668. doi: 10.1101/gad.289280.116. Epub 2016 Dec 28.
10
Salt-inducible Protein Splicing in cis and trans by Inteins from Extremely Halophilic Archaea as a Novel Protein-Engineering Tool.嗜极古菌内含肽在顺式和反式中盐诱导的蛋白质剪接作为一种新型蛋白质工程工具
J Mol Biol. 2016 Nov 20;428(23):4573-4588. doi: 10.1016/j.jmb.2016.10.006. Epub 2016 Oct 6.